Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21210

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21209 and SM_b21210 overlap by 4 nucleotidesSM_b21210 and SM_b21211 are separated by 208 nucleotides SM_b21209: SM_b21209 - two-component sensor histidine kinase, at 961,787 to 963,139 _b21209 SM_b21210: SM_b21210 - two-component response regulator protein, at 963,136 to 963,807 _b21210 SM_b21211: SM_b21211 - hypothetical protein, at 964,016 to 965,782 _b21211 Position (kb) 963 964Strain fitness (log2 ratio) -2 -1 0 1 2at 962.269 kb on + strand, within SM_b21209at 962.650 kb on - strand, within SM_b21209at 962.654 kb on - strand, within SM_b21209at 962.655 kb on + strand, within SM_b21209at 962.656 kb on - strand, within SM_b21209at 962.656 kb on - strand, within SM_b21209at 962.656 kb on - strand, within SM_b21209at 962.656 kb on - strand, within SM_b21209at 962.656 kb on - strand, within SM_b21209at 962.656 kb on - strand, within SM_b21209at 962.877 kb on + strand, within SM_b21209at 962.877 kb on + strand, within SM_b21209at 962.878 kb on - strand, within SM_b21209at 962.878 kb on - strand, within SM_b21209at 962.908 kb on - strand, within SM_b21209at 963.033 kb on + strandat 963.034 kb on - strandat 963.034 kb on - strandat 963.384 kb on + strand, within SM_b21210at 963.384 kb on + strand, within SM_b21210at 963.407 kb on + strand, within SM_b21210at 963.408 kb on - strand, within SM_b21210at 963.439 kb on + strand, within SM_b21210at 963.440 kb on - strand, within SM_b21210at 963.441 kb on + strand, within SM_b21210at 963.441 kb on + strand, within SM_b21210at 963.442 kb on - strand, within SM_b21210at 963.484 kb on - strand, within SM_b21210at 963.547 kb on - strand, within SM_b21210at 963.852 kb on + strandat 963.853 kb on - strandat 963.912 kb on + strandat 964.090 kb on + strandat 964.090 kb on + strandat 964.091 kb on - strandat 964.091 kb on - strandat 964.092 kb on + strandat 964.092 kb on + strandat 964.092 kb on + strandat 964.092 kb on + strandat 964.092 kb on + strandat 964.092 kb on + strandat 964.093 kb on - strandat 964.093 kb on - strandat 964.093 kb on - strandat 964.214 kb on + strand, within SM_b21211at 964.215 kb on - strand, within SM_b21211at 964.257 kb on - strand, within SM_b21211at 964.257 kb on - strand, within SM_b21211at 964.310 kb on + strand, within SM_b21211at 964.338 kb on + strand, within SM_b21211at 964.338 kb on + strand, within SM_b21211at 964.339 kb on - strand, within SM_b21211at 964.553 kb on + strand, within SM_b21211at 964.553 kb on + strand, within SM_b21211at 964.553 kb on + strand, within SM_b21211at 964.554 kb on - strand, within SM_b21211at 964.554 kb on - strand, within SM_b21211at 964.577 kb on + strand, within SM_b21211at 964.594 kb on + strand, within SM_b21211at 964.594 kb on + strand, within SM_b21211at 964.595 kb on - strand, within SM_b21211at 964.595 kb on - strand, within SM_b21211at 964.686 kb on + strand, within SM_b21211at 964.758 kb on + strand, within SM_b21211at 964.758 kb on + strand, within SM_b21211at 964.759 kb on - strand, within SM_b21211at 964.759 kb on - strand, within SM_b21211

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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962,269 + SM_b21209 0.36 +1.1
962,650 - SM_b21209 0.64 -0.8
962,654 - SM_b21209 0.64 -1.1
962,655 + SM_b21209 0.64 +0.8
962,656 - SM_b21209 0.64 +0.9
962,656 - SM_b21209 0.64 -0.1
962,656 - SM_b21209 0.64 +0.3
962,656 - SM_b21209 0.64 -0.7
962,656 - SM_b21209 0.64 +1.4
962,656 - SM_b21209 0.64 -0.2
962,877 + SM_b21209 0.81 -0.4
962,877 + SM_b21209 0.81 +0.1
962,878 - SM_b21209 0.81 +0.0
962,878 - SM_b21209 0.81 +0.0
962,908 - SM_b21209 0.83 +2.6
963,033 + -1.7
963,034 - +0.3
963,034 - +1.7
963,384 + SM_b21210 0.37 +0.4
963,384 + SM_b21210 0.37 -1.5
963,407 + SM_b21210 0.40 -2.3
963,408 - SM_b21210 0.40 -1.3
963,439 + SM_b21210 0.45 +0.7
963,440 - SM_b21210 0.45 +0.7
963,441 + SM_b21210 0.45 -0.3
963,441 + SM_b21210 0.45 -0.9
963,442 - SM_b21210 0.46 -0.3
963,484 - SM_b21210 0.52 -1.5
963,547 - SM_b21210 0.61 -0.7
963,852 + -2.7
963,853 - -0.2
963,912 + -1.8
964,090 + +0.1
964,090 + -0.2
964,091 - -2.3
964,091 - -0.5
964,092 + +0.5
964,092 + +0.9
964,092 + +0.2
964,092 + -0.0
964,092 + +0.9
964,092 + -0.4
964,093 - +0.1
964,093 - +0.9
964,093 - -0.8
964,214 + SM_b21211 0.11 +0.7
964,215 - SM_b21211 0.11 -0.9
964,257 - SM_b21211 0.14 +1.0
964,257 - SM_b21211 0.14 +0.8
964,310 + SM_b21211 0.17 -1.3
964,338 + SM_b21211 0.18 +0.4
964,338 + SM_b21211 0.18 +2.1
964,339 - SM_b21211 0.18 +0.0
964,553 + SM_b21211 0.30 +0.4
964,553 + SM_b21211 0.30 -1.1
964,553 + SM_b21211 0.30 -0.2
964,554 - SM_b21211 0.30 +0.3
964,554 - SM_b21211 0.30 +0.5
964,577 + SM_b21211 0.32 +1.3
964,594 + SM_b21211 0.33 +0.1
964,594 + SM_b21211 0.33 +0.9
964,595 - SM_b21211 0.33 +0.4
964,595 - SM_b21211 0.33 +0.4
964,686 + SM_b21211 0.38 +0.4
964,758 + SM_b21211 0.42 -0.8
964,758 + SM_b21211 0.42 -0.5
964,759 - SM_b21211 0.42 +0.1
964,759 - SM_b21211 0.42 +2.7

Or see this region's nucleotide sequence