Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20721 and SM_b20722 overlap by 4 nucleotides SM_b20722 and SM_b20723 are separated by 77 nucleotides
SM_b20721: SM_b20721 - two-component sensor histidine kinase, at 1,525,774 to 1,527,171
_b20721
SM_b20722: SM_b20722 - two-component response regulator protein, at 1,527,168 to 1,527,845
_b20722
SM_b20723: SM_b20723 - iron ABC transporter substrate-binding protein precursor, at 1,527,923 to 1,528,990
_b20723
Position (kb)
1527
1528 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1526.892 kb on - strand, within SM_b20721 at 1527.063 kb on + strand at 1527.063 kb on + strand at 1527.064 kb on - strand at 1527.196 kb on + strand at 1527.196 kb on + strand at 1527.196 kb on + strand at 1527.197 kb on - strand at 1527.197 kb on - strand at 1527.268 kb on + strand, within SM_b20722 at 1527.269 kb on - strand, within SM_b20722 at 1527.269 kb on - strand, within SM_b20722 at 1527.269 kb on - strand, within SM_b20722 at 1527.460 kb on + strand, within SM_b20722 at 1527.460 kb on + strand, within SM_b20722 at 1527.536 kb on - strand, within SM_b20722 at 1527.554 kb on - strand, within SM_b20722 at 1527.554 kb on - strand, within SM_b20722 at 1527.554 kb on - strand, within SM_b20722 at 1527.839 kb on + strand at 1527.870 kb on + strand at 1527.871 kb on - strand at 1527.871 kb on - strand at 1528.038 kb on - strand, within SM_b20723 at 1528.038 kb on - strand, within SM_b20723 at 1528.038 kb on - strand, within SM_b20723 at 1528.116 kb on - strand, within SM_b20723 at 1528.142 kb on + strand, within SM_b20723 at 1528.142 kb on + strand, within SM_b20723 at 1528.143 kb on - strand, within SM_b20723 at 1528.143 kb on - strand, within SM_b20723 at 1528.241 kb on + strand, within SM_b20723 at 1528.310 kb on + strand, within SM_b20723 at 1528.311 kb on - strand, within SM_b20723 at 1528.343 kb on + strand, within SM_b20723 at 1528.344 kb on - strand, within SM_b20723 at 1528.403 kb on + strand, within SM_b20723 at 1528.404 kb on - strand, within SM_b20723 at 1528.448 kb on + strand, within SM_b20723 at 1528.448 kb on + strand, within SM_b20723 at 1528.448 kb on + strand, within SM_b20723 at 1528.448 kb on + strand, within SM_b20723 at 1528.448 kb on + strand, within SM_b20723 at 1528.449 kb on - strand, within SM_b20723 at 1528.449 kb on - strand, within SM_b20723 at 1528.560 kb on - strand, within SM_b20723 at 1528.616 kb on + strand, within SM_b20723 at 1528.616 kb on + strand, within SM_b20723 at 1528.617 kb on - strand at 1528.634 kb on + strand, within SM_b20723 at 1528.635 kb on - strand, within SM_b20723 at 1528.678 kb on - strand, within SM_b20723 at 1528.678 kb on - strand, within SM_b20723 at 1528.691 kb on + strand, within SM_b20723 at 1528.691 kb on + strand, within SM_b20723 at 1528.692 kb on - strand, within SM_b20723 at 1528.694 kb on - strand, within SM_b20723 at 1528.760 kb on + strand, within SM_b20723 at 1528.761 kb on - strand, within SM_b20723
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 1,526,892 - SM_b20721 0.80 -1.1 1,527,063 + -0.8 1,527,063 + +0.1 1,527,064 - -0.9 1,527,196 + -0.2 1,527,196 + -0.5 1,527,196 + +1.0 1,527,197 - -1.5 1,527,197 - +1.0 1,527,268 + SM_b20722 0.15 -0.2 1,527,269 - SM_b20722 0.15 -0.3 1,527,269 - SM_b20722 0.15 +1.0 1,527,269 - SM_b20722 0.15 +0.3 1,527,460 + SM_b20722 0.43 +1.5 1,527,460 + SM_b20722 0.43 +1.2 1,527,536 - SM_b20722 0.54 -3.7 1,527,554 - SM_b20722 0.57 +1.1 1,527,554 - SM_b20722 0.57 +0.2 1,527,554 - SM_b20722 0.57 -0.3 1,527,839 + +1.2 1,527,870 + +0.6 1,527,871 - -0.7 1,527,871 - +0.1 1,528,038 - SM_b20723 0.11 +1.2 1,528,038 - SM_b20723 0.11 +0.6 1,528,038 - SM_b20723 0.11 +0.5 1,528,116 - SM_b20723 0.18 -0.1 1,528,142 + SM_b20723 0.21 +1.8 1,528,142 + SM_b20723 0.21 +0.4 1,528,143 - SM_b20723 0.21 +0.3 1,528,143 - SM_b20723 0.21 +0.5 1,528,241 + SM_b20723 0.30 +1.0 1,528,310 + SM_b20723 0.36 -2.5 1,528,311 - SM_b20723 0.36 +2.1 1,528,343 + SM_b20723 0.39 +0.9 1,528,344 - SM_b20723 0.39 +1.5 1,528,403 + SM_b20723 0.45 -0.0 1,528,404 - SM_b20723 0.45 +0.7 1,528,448 + SM_b20723 0.49 +0.5 1,528,448 + SM_b20723 0.49 -0.7 1,528,448 + SM_b20723 0.49 +0.5 1,528,448 + SM_b20723 0.49 +0.4 1,528,448 + SM_b20723 0.49 +0.4 1,528,449 - SM_b20723 0.49 +0.4 1,528,449 - SM_b20723 0.49 +0.5 1,528,560 - SM_b20723 0.60 +0.4 1,528,616 + SM_b20723 0.65 +0.1 1,528,616 + SM_b20723 0.65 +1.2 1,528,617 - -1.5 1,528,634 + SM_b20723 0.67 -1.9 1,528,635 - SM_b20723 0.67 +0.7 1,528,678 - SM_b20723 0.71 +0.8 1,528,678 - SM_b20723 0.71 +2.4 1,528,691 + SM_b20723 0.72 -1.0 1,528,691 + SM_b20723 0.72 +0.6 1,528,692 - SM_b20723 0.72 -1.4 1,528,694 - SM_b20723 0.72 +1.6 1,528,760 + SM_b20723 0.78 -0.1 1,528,761 - SM_b20723 0.78 -0.0
Or see this region's nucleotide sequence