Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20577

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20575 and SM_b20576 are separated by 82 nucleotidesSM_b20576 and SM_b20577 are separated by 10 nucleotidesSM_b20577 and SM_b20578 are separated by 16 nucleotidesSM_b20578 and SM_b20579 overlap by 4 nucleotides SM_b20575: SM_b20575 - 3-carboxy-cis,cis-muconate cycloisomerase, at 1,589,460 to 1,590,515 _b20575 SM_b20576: SM_b20576 - protocatechuate 3,4-dioxygenase subunit alpha, at 1,590,598 to 1,591,212 _b20576 SM_b20577: SM_b20577 - protocatechuate 3,4-dioxygenase subunit beta, at 1,591,223 to 1,591,984 _b20577 SM_b20578: SM_b20578 - gamma carboxymuconolactone decarboxylase, at 1,592,001 to 1,592,408 _b20578 SM_b20579: SM_b20579 - beta-ketoadipate enol-lactone hydrolase, at 1,592,405 to 1,593,211 _b20579 Position (kb) 1591 1592Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1590.487 kb on + strandat 1590.653 kb on + strandat 1590.654 kb on - strandat 1590.654 kb on - strandat 1590.654 kb on - strandat 1590.657 kb on + strandat 1590.658 kb on - strandat 1590.758 kb on + strand, within SM_b20576at 1590.758 kb on + strand, within SM_b20576at 1590.759 kb on - strand, within SM_b20576at 1590.759 kb on - strand, within SM_b20576at 1590.759 kb on - strand, within SM_b20576at 1590.759 kb on - strand, within SM_b20576at 1590.780 kb on + strand, within SM_b20576at 1590.965 kb on + strand, within SM_b20576at 1590.965 kb on + strand, within SM_b20576at 1591.109 kb on + strand, within SM_b20576at 1591.112 kb on - strand, within SM_b20576at 1591.157 kb on + strandat 1591.157 kb on + strandat 1591.158 kb on - strandat 1591.158 kb on - strandat 1591.212 kb on + strandat 1591.416 kb on + strand, within SM_b20577at 1591.416 kb on + strand, within SM_b20577at 1591.416 kb on + strand, within SM_b20577at 1591.416 kb on + strand, within SM_b20577at 1591.472 kb on - strand, within SM_b20577at 1591.513 kb on - strand, within SM_b20577at 1591.759 kb on + strand, within SM_b20577at 1591.759 kb on + strand, within SM_b20577at 1592.086 kb on + strand, within SM_b20578at 1592.086 kb on + strand, within SM_b20578at 1592.087 kb on - strand, within SM_b20578at 1592.087 kb on - strand, within SM_b20578at 1592.087 kb on - strand, within SM_b20578at 1592.117 kb on + strand, within SM_b20578at 1592.118 kb on - strand, within SM_b20578at 1592.343 kb on + strand, within SM_b20578at 1592.344 kb on - strand, within SM_b20578at 1592.487 kb on - strand, within SM_b20579at 1592.488 kb on + strand, within SM_b20579at 1592.488 kb on + strand, within SM_b20579at 1592.488 kb on + strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.529 kb on - strand, within SM_b20579

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,590,487 + +1.0
1,590,653 + -0.0
1,590,654 - +1.4
1,590,654 - +0.2
1,590,654 - -1.2
1,590,657 + +0.2
1,590,658 - -2.1
1,590,758 + SM_b20576 0.26 +1.1
1,590,758 + SM_b20576 0.26 +0.7
1,590,759 - SM_b20576 0.26 +0.7
1,590,759 - SM_b20576 0.26 +0.6
1,590,759 - SM_b20576 0.26 -0.5
1,590,759 - SM_b20576 0.26 +0.1
1,590,780 + SM_b20576 0.30 -0.9
1,590,965 + SM_b20576 0.60 +1.8
1,590,965 + SM_b20576 0.60 +0.8
1,591,109 + SM_b20576 0.83 +1.0
1,591,112 - SM_b20576 0.84 -0.2
1,591,157 + +0.2
1,591,157 + +0.7
1,591,158 - -1.3
1,591,158 - +0.2
1,591,212 + -0.1
1,591,416 + SM_b20577 0.25 +0.7
1,591,416 + SM_b20577 0.25 +2.3
1,591,416 + SM_b20577 0.25 +0.6
1,591,416 + SM_b20577 0.25 +0.9
1,591,472 - SM_b20577 0.33 +0.1
1,591,513 - SM_b20577 0.38 -0.8
1,591,759 + SM_b20577 0.70 +0.0
1,591,759 + SM_b20577 0.70 +0.8
1,592,086 + SM_b20578 0.21 -0.6
1,592,086 + SM_b20578 0.21 +1.8
1,592,087 - SM_b20578 0.21 +0.5
1,592,087 - SM_b20578 0.21 -1.1
1,592,087 - SM_b20578 0.21 +3.2
1,592,117 + SM_b20578 0.28 +1.3
1,592,118 - SM_b20578 0.29 +1.3
1,592,343 + SM_b20578 0.84 -0.6
1,592,344 - SM_b20578 0.84 -0.0
1,592,487 - SM_b20579 0.10 -0.2
1,592,488 + SM_b20579 0.10 +1.8
1,592,488 + SM_b20579 0.10 -0.2
1,592,488 + SM_b20579 0.10 -0.4
1,592,489 - SM_b20579 0.10 -0.1
1,592,489 - SM_b20579 0.10 +0.2
1,592,489 - SM_b20579 0.10 +0.0
1,592,489 - SM_b20579 0.10 +0.0
1,592,489 - SM_b20579 0.10 +1.8
1,592,489 - SM_b20579 0.10 +0.5
1,592,489 - SM_b20579 0.10 +0.5
1,592,489 - SM_b20579 0.10 -2.4
1,592,529 - SM_b20579 0.15 -0.4

Or see this region's nucleotide sequence