Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20132 and SM_b20133 overlap by 1 nucleotides SM_b20133 and SM_b20134 are separated by 202 nucleotides
SM_b20132: SM_b20132 - dehydrogenase, at 143,977 to 146,295
_b20132
SM_b20133: SM_b20133 - hypothetical protein, at 146,295 to 147,344
_b20133
SM_b20134: SM_b20134 - permease, at 147,547 to 148,938
_b20134
Position (kb) 146
147
148 Strain fitness (log2 ratio) -2
-1
0
1
2 at 145.476 kb on + strand, within SM_b20132 at 145.571 kb on + strand, within SM_b20132 at 145.813 kb on + strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.832 kb on - strand, within SM_b20132 at 146.005 kb on + strand, within SM_b20132 at 146.019 kb on + strand, within SM_b20132 at 146.056 kb on + strand, within SM_b20132 at 146.056 kb on + strand, within SM_b20132 at 146.056 kb on + strand, within SM_b20132 at 146.057 kb on - strand, within SM_b20132 at 146.200 kb on + strand at 146.201 kb on - strand at 146.386 kb on + strand at 146.386 kb on + strand at 146.387 kb on - strand at 146.387 kb on - strand at 146.487 kb on + strand, within SM_b20133 at 146.488 kb on - strand, within SM_b20133 at 146.947 kb on - strand, within SM_b20133 at 147.148 kb on + strand, within SM_b20133 at 147.149 kb on - strand, within SM_b20133 at 147.149 kb on - strand, within SM_b20133 at 147.151 kb on + strand, within SM_b20133 at 147.152 kb on - strand, within SM_b20133 at 147.152 kb on - strand, within SM_b20133 at 147.248 kb on + strand at 147.248 kb on + strand at 147.248 kb on + strand at 147.248 kb on + strand at 147.482 kb on + strand at 147.765 kb on - strand, within SM_b20134 at 147.866 kb on + strand, within SM_b20134 at 147.866 kb on + strand, within SM_b20134 at 147.867 kb on - strand, within SM_b20134 at 147.998 kb on + strand, within SM_b20134 at 147.998 kb on + strand, within SM_b20134 at 147.998 kb on + strand, within SM_b20134 at 147.999 kb on - strand, within SM_b20134 at 148.007 kb on + strand, within SM_b20134 at 148.007 kb on + strand, within SM_b20134 at 148.007 kb on + strand, within SM_b20134 at 148.007 kb on + strand, within SM_b20134 at 148.237 kb on - strand, within SM_b20134 at 148.277 kb on - strand, within SM_b20134 at 148.277 kb on - strand, within SM_b20134
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 145,476 + SM_b20132 0.65 +0.2 145,571 + SM_b20132 0.69 +0.5 145,813 + SM_b20132 0.79 +1.8 145,814 - SM_b20132 0.79 -0.7 145,814 - SM_b20132 0.79 -0.2 145,814 - SM_b20132 0.79 -0.2 145,814 - SM_b20132 0.79 -1.4 145,814 - SM_b20132 0.79 +0.5 145,814 - SM_b20132 0.79 -0.6 145,814 - SM_b20132 0.79 -0.7 145,814 - SM_b20132 0.79 -1.1 145,832 - SM_b20132 0.80 +0.4 146,005 + SM_b20132 0.87 +0.2 146,019 + SM_b20132 0.88 -1.6 146,056 + SM_b20132 0.90 +0.4 146,056 + SM_b20132 0.90 +1.8 146,056 + SM_b20132 0.90 +1.6 146,057 - SM_b20132 0.90 -1.5 146,200 + +0.2 146,201 - -0.1 146,386 + +0.6 146,386 + +0.8 146,387 - -0.2 146,387 - +0.2 146,487 + SM_b20133 0.18 -0.9 146,488 - SM_b20133 0.18 -0.8 146,947 - SM_b20133 0.62 +0.2 147,148 + SM_b20133 0.81 +0.4 147,149 - SM_b20133 0.81 +0.2 147,149 - SM_b20133 0.81 -0.5 147,151 + SM_b20133 0.82 +0.1 147,152 - SM_b20133 0.82 -2.0 147,152 - SM_b20133 0.82 -0.8 147,248 + -0.1 147,248 + -2.3 147,248 + +0.9 147,248 + -1.4 147,482 + -0.0 147,765 - SM_b20134 0.16 -1.6 147,866 + SM_b20134 0.23 +1.4 147,866 + SM_b20134 0.23 -0.8 147,867 - SM_b20134 0.23 -1.0 147,998 + SM_b20134 0.32 +1.3 147,998 + SM_b20134 0.32 +0.8 147,998 + SM_b20134 0.32 +0.8 147,999 - SM_b20134 0.32 -1.9 148,007 + SM_b20134 0.33 -1.1 148,007 + SM_b20134 0.33 -0.5 148,007 + SM_b20134 0.33 +0.1 148,007 + SM_b20134 0.33 +0.1 148,237 - SM_b20134 0.50 -0.1 148,277 - SM_b20134 0.52 -0.5 148,277 - SM_b20134 0.52 +0.0
Or see this region's nucleotide sequence