Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20006 and SM_b20007 are separated by 114 nucleotides SM_b20007 and SM_b20008 are separated by 25 nucleotides
SM_b20006: SM_b20006 - hypothetical protein, at 9,086 to 10,039
_b20006
SM_b20007: SM_b20007 - catalase C protein, at 10,154 to 12,271
_b20007
SM_b20008: SM_b20008 - ATP-dependent DNA ligase, at 12,297 to 13,364
_b20008
Position (kb)
10
11
12
13 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 9.500 kb on - strand, within SM_b20006 at 9.561 kb on - strand, within SM_b20006 at 9.695 kb on + strand, within SM_b20006 at 10.009 kb on - strand at 10.078 kb on - strand at 10.183 kb on + strand at 10.183 kb on + strand at 10.339 kb on + strand at 10.428 kb on - strand, within SM_b20007 at 10.686 kb on + strand, within SM_b20007 at 10.686 kb on + strand, within SM_b20007 at 10.686 kb on + strand, within SM_b20007 at 10.687 kb on - strand, within SM_b20007 at 10.687 kb on - strand, within SM_b20007 at 10.687 kb on - strand, within SM_b20007 at 10.695 kb on + strand, within SM_b20007 at 10.696 kb on - strand, within SM_b20007 at 11.277 kb on - strand, within SM_b20007 at 11.412 kb on - strand, within SM_b20007 at 11.531 kb on + strand, within SM_b20007 at 11.532 kb on - strand, within SM_b20007 at 11.995 kb on - strand, within SM_b20007 at 12.101 kb on + strand at 12.101 kb on + strand at 12.102 kb on - strand at 12.102 kb on - strand at 12.102 kb on - strand at 12.103 kb on + strand at 12.104 kb on - strand at 12.226 kb on + strand at 12.226 kb on + strand at 12.283 kb on - strand at 12.444 kb on + strand, within SM_b20008 at 12.445 kb on - strand, within SM_b20008 at 12.445 kb on - strand, within SM_b20008 at 12.503 kb on + strand, within SM_b20008 at 12.503 kb on + strand, within SM_b20008 at 12.505 kb on + strand, within SM_b20008 at 12.505 kb on + strand, within SM_b20008 at 12.931 kb on + strand, within SM_b20008 at 12.932 kb on - strand, within SM_b20008 at 12.933 kb on + strand, within SM_b20008 at 12.933 kb on + strand, within SM_b20008 at 12.934 kb on - strand, within SM_b20008 at 13.088 kb on + strand, within SM_b20008 at 13.268 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 9,500 - SM_b20006 0.43 -0.6 9,561 - SM_b20006 0.50 -1.2 9,695 + SM_b20006 0.64 +0.5 10,009 - +0.4 10,078 - -0.0 10,183 + +1.4 10,183 + +1.1 10,339 + +0.4 10,428 - SM_b20007 0.13 +0.0 10,686 + SM_b20007 0.25 +0.4 10,686 + SM_b20007 0.25 +0.7 10,686 + SM_b20007 0.25 +0.3 10,687 - SM_b20007 0.25 +1.0 10,687 - SM_b20007 0.25 -1.2 10,687 - SM_b20007 0.25 -3.0 10,695 + SM_b20007 0.26 +0.2 10,696 - SM_b20007 0.26 +1.4 11,277 - SM_b20007 0.53 -0.1 11,412 - SM_b20007 0.59 +1.0 11,531 + SM_b20007 0.65 +2.5 11,532 - SM_b20007 0.65 +0.5 11,995 - SM_b20007 0.87 -0.9 12,101 + +0.3 12,101 + +0.6 12,102 - -0.5 12,102 - -0.7 12,102 - -1.0 12,103 + +1.0 12,104 - +0.7 12,226 + -1.8 12,226 + -0.6 12,283 - -1.1 12,444 + SM_b20008 0.14 +0.2 12,445 - SM_b20008 0.14 -0.2 12,445 - SM_b20008 0.14 +1.0 12,503 + SM_b20008 0.19 -0.6 12,503 + SM_b20008 0.19 -0.3 12,505 + SM_b20008 0.19 +0.8 12,505 + SM_b20008 0.19 +0.5 12,931 + SM_b20008 0.59 -0.2 12,932 - SM_b20008 0.59 +1.0 12,933 + SM_b20008 0.60 +0.5 12,933 + SM_b20008 0.60 -0.7 12,934 - SM_b20008 0.60 +0.4 13,088 + SM_b20008 0.74 -0.5 13,268 + +0.6
Or see this region's nucleotide sequence