Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20007

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20006 and SM_b20007 are separated by 114 nucleotidesSM_b20007 and SM_b20008 are separated by 25 nucleotides SM_b20006: SM_b20006 - hypothetical protein, at 9,086 to 10,039 _b20006 SM_b20007: SM_b20007 - catalase C protein, at 10,154 to 12,271 _b20007 SM_b20008: SM_b20008 - ATP-dependent DNA ligase, at 12,297 to 13,364 _b20008 Position (kb) 10 11 12 13Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 9.500 kb on - strand, within SM_b20006at 9.561 kb on - strand, within SM_b20006at 9.695 kb on + strand, within SM_b20006at 10.009 kb on - strandat 10.078 kb on - strandat 10.183 kb on + strandat 10.183 kb on + strandat 10.339 kb on + strandat 10.428 kb on - strand, within SM_b20007at 10.686 kb on + strand, within SM_b20007at 10.686 kb on + strand, within SM_b20007at 10.686 kb on + strand, within SM_b20007at 10.687 kb on - strand, within SM_b20007at 10.687 kb on - strand, within SM_b20007at 10.687 kb on - strand, within SM_b20007at 10.695 kb on + strand, within SM_b20007at 10.696 kb on - strand, within SM_b20007at 11.277 kb on - strand, within SM_b20007at 11.412 kb on - strand, within SM_b20007at 11.531 kb on + strand, within SM_b20007at 11.532 kb on - strand, within SM_b20007at 11.995 kb on - strand, within SM_b20007at 12.101 kb on + strandat 12.101 kb on + strandat 12.102 kb on - strandat 12.102 kb on - strandat 12.102 kb on - strandat 12.103 kb on + strandat 12.104 kb on - strandat 12.226 kb on + strandat 12.226 kb on + strandat 12.283 kb on - strandat 12.444 kb on + strand, within SM_b20008at 12.445 kb on - strand, within SM_b20008at 12.445 kb on - strand, within SM_b20008at 12.503 kb on + strand, within SM_b20008at 12.503 kb on + strand, within SM_b20008at 12.505 kb on + strand, within SM_b20008at 12.505 kb on + strand, within SM_b20008at 12.931 kb on + strand, within SM_b20008at 12.932 kb on - strand, within SM_b20008at 12.933 kb on + strand, within SM_b20008at 12.933 kb on + strand, within SM_b20008at 12.934 kb on - strand, within SM_b20008at 13.088 kb on + strand, within SM_b20008at 13.268 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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9,500 - SM_b20006 0.43 -0.6
9,561 - SM_b20006 0.50 -1.2
9,695 + SM_b20006 0.64 +0.5
10,009 - +0.4
10,078 - -0.0
10,183 + +1.4
10,183 + +1.1
10,339 + +0.4
10,428 - SM_b20007 0.13 +0.0
10,686 + SM_b20007 0.25 +0.4
10,686 + SM_b20007 0.25 +0.7
10,686 + SM_b20007 0.25 +0.3
10,687 - SM_b20007 0.25 +1.0
10,687 - SM_b20007 0.25 -1.2
10,687 - SM_b20007 0.25 -3.0
10,695 + SM_b20007 0.26 +0.2
10,696 - SM_b20007 0.26 +1.4
11,277 - SM_b20007 0.53 -0.1
11,412 - SM_b20007 0.59 +1.0
11,531 + SM_b20007 0.65 +2.5
11,532 - SM_b20007 0.65 +0.5
11,995 - SM_b20007 0.87 -0.9
12,101 + +0.3
12,101 + +0.6
12,102 - -0.5
12,102 - -0.7
12,102 - -1.0
12,103 + +1.0
12,104 - +0.7
12,226 + -1.8
12,226 + -0.6
12,283 - -1.1
12,444 + SM_b20008 0.14 +0.2
12,445 - SM_b20008 0.14 -0.2
12,445 - SM_b20008 0.14 +1.0
12,503 + SM_b20008 0.19 -0.6
12,503 + SM_b20008 0.19 -0.3
12,505 + SM_b20008 0.19 +0.8
12,505 + SM_b20008 0.19 +0.5
12,931 + SM_b20008 0.59 -0.2
12,932 - SM_b20008 0.59 +1.0
12,933 + SM_b20008 0.60 +0.5
12,933 + SM_b20008 0.60 -0.7
12,934 - SM_b20008 0.60 +0.4
13,088 + SM_b20008 0.74 -0.5
13,268 + +0.6

Or see this region's nucleotide sequence