Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00370 and HSERO_RS00375 are separated by 39 nucleotides HSERO_RS00375 and HSERO_RS00380 are separated by 17 nucleotides HSERO_RS00380 and HSERO_RS00385 are separated by 22 nucleotides
HSERO_RS00370: HSERO_RS00370 - peptide transporter, at 87,886 to 89,892
_RS00370
HSERO_RS00375: HSERO_RS00375 - phosphatidate cytidylyltransferase, at 89,932 to 90,873
_RS00375
HSERO_RS00380: HSERO_RS00380 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 90,891 to 91,508
_RS00380
HSERO_RS00385: HSERO_RS00385 - hypothetical protein, at 91,531 to 92,040
_RS00385
Position (kb) 89
90
91 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 88.932 kb on + strand, within HSERO_RS00370 at 88.940 kb on + strand, within HSERO_RS00370 at 89.308 kb on + strand, within HSERO_RS00370 at 89.313 kb on + strand, within HSERO_RS00370 at 89.365 kb on + strand, within HSERO_RS00370 at 89.378 kb on - strand, within HSERO_RS00370 at 89.547 kb on + strand, within HSERO_RS00370 at 89.594 kb on - strand, within HSERO_RS00370 at 89.594 kb on - strand, within HSERO_RS00370 at 89.594 kb on - strand, within HSERO_RS00370 at 89.607 kb on - strand, within HSERO_RS00370 at 89.607 kb on - strand, within HSERO_RS00370 at 89.705 kb on + strand at 89.743 kb on + strand at 89.840 kb on + strand at 89.905 kb on + strand at 89.984 kb on - strand at 89.999 kb on + strand at 90.192 kb on - strand at 90.192 kb on - strand, within HSERO_RS00375 at 90.317 kb on - strand, within HSERO_RS00375 at 90.499 kb on - strand, within HSERO_RS00375 at 90.583 kb on - strand, within HSERO_RS00375 at 90.614 kb on - strand, within HSERO_RS00375 at 90.867 kb on - strand at 90.972 kb on + strand, within HSERO_RS00380 at 91.073 kb on + strand, within HSERO_RS00380 at 91.252 kb on + strand, within HSERO_RS00380 at 91.274 kb on - strand, within HSERO_RS00380 at 91.357 kb on + strand, within HSERO_RS00380 at 91.365 kb on - strand, within HSERO_RS00380 at 91.399 kb on - strand, within HSERO_RS00380 at 91.416 kb on + strand, within HSERO_RS00380 at 91.460 kb on + strand at 91.463 kb on - strand at 91.516 kb on - strand at 91.635 kb on + strand, within HSERO_RS00385 at 91.655 kb on - strand, within HSERO_RS00385 at 91.726 kb on + strand, within HSERO_RS00385 at 91.759 kb on + strand, within HSERO_RS00385 at 91.830 kb on + strand, within HSERO_RS00385
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 88,932 + HSERO_RS00370 0.52 -0.7 88,940 + HSERO_RS00370 0.53 -0.1 89,308 + HSERO_RS00370 0.71 -1.5 89,313 + HSERO_RS00370 0.71 -1.3 89,365 + HSERO_RS00370 0.74 +0.4 89,378 - HSERO_RS00370 0.74 -0.1 89,547 + HSERO_RS00370 0.83 -0.3 89,594 - HSERO_RS00370 0.85 -3.2 89,594 - HSERO_RS00370 0.85 -0.2 89,594 - HSERO_RS00370 0.85 -1.8 89,607 - HSERO_RS00370 0.86 -0.2 89,607 - HSERO_RS00370 0.86 -0.3 89,705 + -0.1 89,743 + -0.1 89,840 + -0.1 89,905 + -0.9 89,984 - +0.1 89,999 + +1.2 90,192 - +0.0 90,192 - HSERO_RS00375 0.28 +1.7 90,317 - HSERO_RS00375 0.41 +0.3 90,499 - HSERO_RS00375 0.60 -0.3 90,583 - HSERO_RS00375 0.69 +3.3 90,614 - HSERO_RS00375 0.72 -0.1 90,867 - -0.2 90,972 + HSERO_RS00380 0.13 +1.1 91,073 + HSERO_RS00380 0.29 +1.2 91,252 + HSERO_RS00380 0.58 -0.6 91,274 - HSERO_RS00380 0.62 -0.6 91,357 + HSERO_RS00380 0.75 -0.1 91,365 - HSERO_RS00380 0.77 -0.5 91,399 - HSERO_RS00380 0.82 +0.1 91,416 + HSERO_RS00380 0.85 -0.5 91,460 + -0.8 91,463 - +0.3 91,516 - +0.6 91,635 + HSERO_RS00385 0.20 -0.3 91,655 - HSERO_RS00385 0.24 +0.2 91,726 + HSERO_RS00385 0.38 +0.8 91,759 + HSERO_RS00385 0.45 -0.2 91,830 + HSERO_RS00385 0.59 +1.3
Or see this region's nucleotide sequence