Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36580 and BPHYT_RS36585 are separated by 134 nucleotides BPHYT_RS36585 and BPHYT_RS36590 are separated by 51 nucleotides BPHYT_RS36590 and BPHYT_RS36595 are separated by 191 nucleotides BPHYT_RS36595 and BPHYT_RS36600 are separated by 32 nucleotides
BPHYT_RS36580: BPHYT_RS36580 - hypothetical protein, at 117,828 to 118,277
_RS36580
BPHYT_RS36585: BPHYT_RS36585 - hypothetical protein, at 118,412 to 119,104
_RS36585
BPHYT_RS36590: BPHYT_RS36590 - hypothetical protein, at 119,156 to 119,395
_RS36590
BPHYT_RS36595: BPHYT_RS36595 - hypothetical protein, at 119,587 to 120,114
_RS36595
BPHYT_RS36600: BPHYT_RS36600 - lytic transglycosylase, at 120,147 to 120,596
_RS36600
Position (kb) 119
120 Strain fitness (log2 ratio) -2
-1
0
1
2 at 118.317 kb on + strand at 118.317 kb on + strand at 118.395 kb on + strand at 118.395 kb on + strand at 118.395 kb on + strand at 118.396 kb on - strand at 118.396 kb on - strand at 118.413 kb on + strand at 118.413 kb on + strand at 118.414 kb on - strand at 118.464 kb on + strand at 118.464 kb on + strand at 118.670 kb on + strand, within BPHYT_RS36585 at 118.968 kb on - strand, within BPHYT_RS36585 at 119.001 kb on + strand, within BPHYT_RS36585 at 119.157 kb on + strand at 119.157 kb on + strand at 119.289 kb on + strand, within BPHYT_RS36590 at 119.289 kb on + strand, within BPHYT_RS36590 at 119.292 kb on + strand, within BPHYT_RS36590 at 119.536 kb on - strand at 119.862 kb on + strand, within BPHYT_RS36595 at 119.890 kb on + strand, within BPHYT_RS36595 at 119.995 kb on + strand, within BPHYT_RS36595 at 120.030 kb on + strand, within BPHYT_RS36595 at 120.046 kb on + strand, within BPHYT_RS36595 at 120.128 kb on + strand at 120.312 kb on + strand, within BPHYT_RS36600
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 118,317 + +0.4 118,317 + -0.7 118,395 + +0.3 118,395 + +0.5 118,395 + +0.3 118,396 - -0.2 118,396 - +0.6 118,413 + -0.1 118,413 + -0.4 118,414 - +1.5 118,464 + -0.5 118,464 + +0.6 118,670 + BPHYT_RS36585 0.37 +1.3 118,968 - BPHYT_RS36585 0.80 -1.0 119,001 + BPHYT_RS36585 0.85 +0.4 119,157 + -1.4 119,157 + +0.0 119,289 + BPHYT_RS36590 0.55 +2.6 119,289 + BPHYT_RS36590 0.55 +0.3 119,292 + BPHYT_RS36590 0.57 -0.9 119,536 - -0.4 119,862 + BPHYT_RS36595 0.52 +0.0 119,890 + BPHYT_RS36595 0.57 +1.0 119,995 + BPHYT_RS36595 0.77 +0.4 120,030 + BPHYT_RS36595 0.84 +0.9 120,046 + BPHYT_RS36595 0.87 -0.4 120,128 + +1.8 120,312 + BPHYT_RS36600 0.37 -1.9
Or see this region's nucleotide sequence