Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34830

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,418,723	-		BPHYT_RS34825	0.38	-1.6
3,418,827	+		BPHYT_RS34825	0.49	+0.4
3,418,828	-		BPHYT_RS34825	0.49	-1.2
3,418,828	-		BPHYT_RS34825	0.49	-0.4
3,418,828	-		BPHYT_RS34825	0.49	-0.5
3,418,981	-		BPHYT_RS34825	0.66	-0.4
3,418,981	-		BPHYT_RS34825	0.66	+0.0
3,419,205	+		BPHYT_RS34825	0.89	-0.2
3,419,205	+		BPHYT_RS34825	0.89	+1.3
3,419,206	-		BPHYT_RS34825	0.89	-0.6
3,419,206	-		BPHYT_RS34825	0.89	+0.5
3,419,206	-		BPHYT_RS34825	0.89	+1.0
3,419,206	-		BPHYT_RS34825	0.89	-0.5
3,419,228	+				-2.5
3,419,305	+				+0.6
3,419,306	-				-1.1
3,419,376	+				-1.5
3,419,376	+				-2.0
3,419,377	-				-0.2
3,419,381	-				-0.3
3,419,437	+				-0.2
3,419,592	+				+0.3
3,419,592	+				-0.7
3,419,593	-				-2.1
3,419,593	-				-1.5
3,419,593	-				+0.1
3,419,593	-				-0.2
3,419,593	-				-0.3
3,419,596	+				+0.4
3,419,597	-				-0.4
3,419,597	-				+0.1
3,419,726	+				-2.3
3,419,727	-				-0.1
3,419,727	-				-2.8
3,419,727	-				+0.5
3,419,727	-				+1.0
3,419,727	-				+0.6
3,419,731	-				-0.9
3,419,903	+		BPHYT_RS34830	0.29	-0.5
3,419,903	+		BPHYT_RS34830	0.29	-0.8
3,419,904	-		BPHYT_RS34830	0.29	+0.3
3,419,904	-		BPHYT_RS34830	0.29	-0.2
3,419,904	-		BPHYT_RS34830	0.29	-2.7
3,419,970	+		BPHYT_RS34830	0.37	-2.9
3,419,971	-		BPHYT_RS34830	0.37	-0.5
3,420,156	+		BPHYT_RS34830	0.58	-0.2
3,420,173	+		BPHYT_RS34830	0.60	+0.1
3,420,174	-		BPHYT_RS34830	0.61	-0.7
3,420,331	+		BPHYT_RS34830	0.79	-0.6
3,420,332	-		BPHYT_RS34830	0.79	-0.3
3,420,388	-		BPHYT_RS34830	0.85	-0.6
3,420,484	+				+0.4
3,420,514	-				-0.4
3,420,725	+		BPHYT_RS34835	0.18	-0.9
3,420,725	+		BPHYT_RS34835	0.18	-0.9
3,420,725	+		BPHYT_RS34835	0.18	-0.4
3,420,726	-		BPHYT_RS34835	0.18	-1.4
3,420,895	+		BPHYT_RS34835	0.32	+0.1
3,420,896	-		BPHYT_RS34835	0.32	-1.1
3,421,106	+		BPHYT_RS34835	0.50	-0.1
3,421,106	+		BPHYT_RS34835	0.50	-0.6
3,421,436	+		BPHYT_RS34835	0.79	-0.4