Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34565

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,360,019	+		BPHYT_RS34555	0.62	-0.3
3,360,208	+		BPHYT_RS34555	0.81	+0.7
3,360,472	-				-0.8
3,360,746	+		BPHYT_RS34560	0.59	-0.3
3,360,746	+		BPHYT_RS34560	0.59	+2.2
3,360,747	-		BPHYT_RS34560	0.59	-0.0
3,360,747	-		BPHYT_RS34560	0.59	+0.8
3,361,114	+		BPHYT_RS34565	0.20	-0.0
3,361,425	-		BPHYT_RS34565	0.62	-0.4
3,361,688	-				+0.4
3,361,688	-				-0.4
3,361,731	-				-0.2
3,361,896	+				+0.1
3,361,897	-				-0.2
3,361,897	-				+0.2
3,361,897	-				+0.0
3,361,897	-				-0.1
3,362,304	-		BPHYT_RS34570	0.23	+0.4