Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34225

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,279,525	+				+0.7
3,279,525	+				-0.3
3,279,526	-				-0.1
3,279,526	-				-1.7
3,279,671	+		BPHYT_RS34220	0.12	-0.2
3,279,672	-		BPHYT_RS34220	0.13	-0.8
3,279,756	-		BPHYT_RS34220	0.23	-0.3
3,279,980	+		BPHYT_RS34220	0.50	-1.7
3,280,350	-				+1.5
3,280,350	-				-0.0
3,280,392	+				-0.0
3,280,609	+		BPHYT_RS34225	0.20	-0.2
3,280,668	+		BPHYT_RS34225	0.25	-0.0
3,280,668	+		BPHYT_RS34225	0.25	+0.3
3,280,668	+		BPHYT_RS34225	0.25	-0.4
3,280,730	+		BPHYT_RS34225	0.31	+1.0
3,280,801	+		BPHYT_RS34225	0.38	+1.8
3,280,801	+		BPHYT_RS34225	0.38	+1.1
3,280,801	+		BPHYT_RS34225	0.38	+2.3
3,281,085	+		BPHYT_RS34225	0.65	+1.5
3,281,092	-		BPHYT_RS34225	0.66	-1.7
3,281,474	+				-0.3
3,281,475	-				+1.5
3,281,637	+				+0.7
3,281,637	+				-0.0
3,281,637	+				+0.4
3,281,637	+				-0.3
3,281,803	-		BPHYT_RS34230	0.19	-0.8
3,282,141	+		BPHYT_RS34230	0.45	+0.2