Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33880

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,191,809	+		BPHYT_RS33875	0.28	-5.0
3,191,810	-		BPHYT_RS33875	0.28	+2.2
3,191,810	-		BPHYT_RS33875	0.28	-2.7
3,191,829	+		BPHYT_RS33875	0.29	-5.4
3,191,932	+		BPHYT_RS33875	0.38	-1.4
3,192,106	+		BPHYT_RS33875	0.53	-3.4
3,192,107	-		BPHYT_RS33875	0.53	-6.3
3,192,107	-		BPHYT_RS33875	0.53	-3.0
3,192,225	+		BPHYT_RS33875	0.63	-2.9
3,192,225	+		BPHYT_RS33875	0.63	-4.6
3,192,266	-				-1.4
3,192,266	-		BPHYT_RS33875	0.66	-3.9
3,192,266	-		BPHYT_RS33875	0.66	-1.6
3,192,562	+				+0.6
3,192,665	+				-3.9
3,192,667	+				-2.9
3,192,668	-				-1.4
3,192,842	-		BPHYT_RS33880	0.15	-2.0
3,192,929	+		BPHYT_RS33880	0.27	-3.3
3,192,930	-		BPHYT_RS33880	0.27	-3.1
3,193,010	-		BPHYT_RS33880	0.38	-2.2
3,193,013	+		BPHYT_RS33880	0.38	-6.7
3,193,013	+		BPHYT_RS33880	0.38	-1.9
3,193,013	+		BPHYT_RS33880	0.38	-4.4
3,193,014	-		BPHYT_RS33880	0.38	-4.8
3,193,026	+		BPHYT_RS33880	0.40	-1.9
3,193,289	-		BPHYT_RS33880	0.76	-4.2
3,193,472	-				-0.7
3,193,525	-		BPHYT_RS33885	0.10	-1.3
3,193,542	+		BPHYT_RS33885	0.12	-0.2
3,193,542	+		BPHYT_RS33885	0.12	-0.8
3,193,543	-		BPHYT_RS33885	0.12	-0.6
3,193,641	+		BPHYT_RS33885	0.24	+0.1
3,193,642	-		BPHYT_RS33885	0.25	-0.9
3,193,642	-		BPHYT_RS33885	0.25	-0.4
3,193,743	+		BPHYT_RS33885	0.37	-0.9
3,193,744	-		BPHYT_RS33885	0.37	-0.7
3,193,859	-		BPHYT_RS33885	0.51	+0.1
3,193,859	-		BPHYT_RS33885	0.51	-0.8
3,193,859	-		BPHYT_RS33885	0.51	-2.3
3,193,859	-		BPHYT_RS33885	0.51	-1.9
3,193,911	+		BPHYT_RS33885	0.58	-1.3
3,193,911	+		BPHYT_RS33885	0.58	-0.1
3,193,911	+		BPHYT_RS33885	0.58	-2.1
3,193,911	+		BPHYT_RS33885	0.58	+0.2
3,193,920	+		BPHYT_RS33885	0.59	+0.5
3,193,920	+		BPHYT_RS33885	0.59	+0.8
3,193,920	+		BPHYT_RS33885	0.59	-1.3
3,193,920	+		BPHYT_RS33885	0.59	-0.7
3,193,920	+		BPHYT_RS33885	0.59	-0.7
3,193,921	-		BPHYT_RS33885	0.59	-1.4
3,193,921	-		BPHYT_RS33885	0.59	+0.4
3,193,923	+		BPHYT_RS33885	0.59	+0.8
3,193,923	+		BPHYT_RS33885	0.59	-0.3
3,193,924	-		BPHYT_RS33885	0.59	-0.3
3,193,927	-		BPHYT_RS33885	0.60	-0.8
3,193,927	-		BPHYT_RS33885	0.60	-0.7
3,193,927	-		BPHYT_RS33885	0.60	-0.6
3,193,927	-		BPHYT_RS33885	0.60	-1.8
3,193,927	-		BPHYT_RS33885	0.60	+0.8
3,194,226	+				+2.1
3,194,227	-				-1.0
3,194,237	+				-0.0
3,194,237	+				-0.6
3,194,238	-				-0.1
3,194,372	+				-0.7
3,194,373	-				-0.0
3,194,394	+				-0.6