Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32870

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS32865 and BPHYT_RS32870 are separated by 207 nucleotidesBPHYT_RS32870 and BPHYT_RS32875 are separated by 206 nucleotides BPHYT_RS32865: BPHYT_RS32865 - choloylglycine hydrolase, at 2,953,010 to 2,954,089 _RS32865 BPHYT_RS32870: BPHYT_RS32870 - hypothetical protein, at 2,954,297 to 2,954,743 _RS32870 BPHYT_RS32875: BPHYT_RS32875 - GCN5 family acetyltransferase, at 2,954,950 to 2,955,762 _RS32875 Position (kb) 2954 2955Strain fitness (log2 ratio) -1 0 1 2 3at 2953.731 kb on - strand, within BPHYT_RS32865at 2953.734 kb on + strand, within BPHYT_RS32865at 2953.823 kb on - strand, within BPHYT_RS32865at 2954.006 kb on - strandat 2954.414 kb on + strand, within BPHYT_RS32870at 2954.524 kb on - strand, within BPHYT_RS32870at 2954.660 kb on + strand, within BPHYT_RS32870at 2954.773 kb on + strandat 2955.416 kb on - strand, within BPHYT_RS32875at 2955.419 kb on + strand, within BPHYT_RS32875

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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2,953,731 - BPHYT_RS32865 0.67 +0.5
2,953,734 + BPHYT_RS32865 0.67 +1.1
2,953,823 - BPHYT_RS32865 0.75 +0.4
2,954,006 - -1.6
2,954,414 + BPHYT_RS32870 0.26 +1.1
2,954,524 - BPHYT_RS32870 0.51 +2.8
2,954,660 + BPHYT_RS32870 0.81 +0.4
2,954,773 + -1.5
2,955,416 - BPHYT_RS32875 0.57 +2.1
2,955,419 + BPHYT_RS32875 0.58 +2.4

Or see this region's nucleotide sequence