Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32430

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,848,035	-		BPHYT_RS32425	0.18	-0.4
2,848,223	+		BPHYT_RS32425	0.37	-0.7
2,848,223	+		BPHYT_RS32425	0.37	+0.2
2,848,224	-		BPHYT_RS32425	0.37	+0.2
2,848,224	-		BPHYT_RS32425	0.37	+0.5
2,848,352	-		BPHYT_RS32425	0.50	-0.6
2,848,517	-		BPHYT_RS32425	0.66	-2.0
2,848,517	-		BPHYT_RS32425	0.66	-0.2
2,848,854	+				+0.1
2,848,951	-				-0.4
2,848,951	-				-0.4
2,849,018	+				-1.7
2,849,018	+				+0.0
2,849,076	-		BPHYT_RS32430	0.17	-1.2
2,849,266	-		BPHYT_RS32430	0.46	-0.1
2,849,348	+		BPHYT_RS32430	0.59	+0.2
2,849,348	+		BPHYT_RS32430	0.59	-0.1
2,849,348	+		BPHYT_RS32430	0.59	-1.7
2,849,349	-		BPHYT_RS32430	0.59	-0.9
2,849,349	-		BPHYT_RS32430	0.59	+0.4
2,849,349	-		BPHYT_RS32430	0.59	-0.2
2,849,470	-		BPHYT_RS32430	0.77	-0.3
2,849,542	-		BPHYT_RS32430	0.88	-1.2
2,849,542	-		BPHYT_RS32430	0.88	-0.5
2,849,642	+				+0.6
2,849,713	-		BPHYT_RS32435	0.11	-1.2
2,850,066	+		BPHYT_RS32435	0.49	+3.6
2,850,067	-		BPHYT_RS32435	0.49	+0.2
2,850,346	-		BPHYT_RS32435	0.79	+2.0
2,850,549	+				-0.8