Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30750

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,453,338	-				+0.3
2,453,338	-				+1.9
2,453,458	-				-0.7
2,453,524	-				-3.0
2,453,585	+				+0.7
2,453,585	+				-0.2
2,453,585	+				-0.2
2,453,709	+		BPHYT_RS30745	0.39	-0.4
2,453,812	-		BPHYT_RS30745	0.68	+0.6
2,453,919	+				+0.9
2,453,920	-				-0.4
2,454,469	+		BPHYT_RS30750	0.58	-1.7
2,454,470	-		BPHYT_RS30750	0.58	-1.8
2,454,470	-		BPHYT_RS30750	0.58	-0.7
2,454,949	-				-0.5
2,455,037	+				-1.3
2,455,038	-				+1.1
2,455,038	-				-0.2
2,455,038	-				-0.5
2,455,118	+				+0.6
2,455,190	+		BPHYT_RS30755	0.11	-0.7
2,455,190	+		BPHYT_RS30755	0.11	-0.2
2,455,190	+		BPHYT_RS30755	0.11	+0.5
2,455,191	-		BPHYT_RS30755	0.11	+0.5
2,455,191	-		BPHYT_RS30755	0.11	+1.1
2,455,192	+		BPHYT_RS30755	0.11	+0.5
2,455,193	-		BPHYT_RS30755	0.11	+0.5
2,455,193	-		BPHYT_RS30755	0.11	-0.6
2,455,377	-		BPHYT_RS30755	0.24	-0.1
2,455,488	-				+0.4
2,455,488	-		BPHYT_RS30755	0.32	-0.3