Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30060

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,298,941	+				-0.3
2,298,941	+				+0.5
2,299,044	-				-0.1
2,299,220	+				+0.1
2,299,220	+				+0.2
2,299,224	+				-0.2
2,299,225	-				-0.1
2,299,225	-				+1.1
2,299,257	-		BPHYT_RS30055	0.16	+0.3
2,299,280	-		BPHYT_RS30055	0.27	-0.8
2,299,309	+		BPHYT_RS30055	0.41	-0.8
2,299,427	-				+3.8
2,299,611	+				-0.7
2,299,625	+				+0.5
2,299,626	-				+2.2
2,299,638	+				+0.3
2,299,675	+		BPHYT_RS30060	0.12	-0.1
2,299,676	-		BPHYT_RS30060	0.12	-2.2
2,299,689	-		BPHYT_RS30060	0.14	+0.8
2,299,708	-		BPHYT_RS30060	0.16	-0.9
2,299,862	+		BPHYT_RS30060	0.39	+2.9
2,299,862	+		BPHYT_RS30060	0.39	+1.2
2,299,996	+		BPHYT_RS30060	0.58	+0.3
2,300,021	+		BPHYT_RS30060	0.61	+1.1
2,300,118	-		BPHYT_RS30060	0.75	+1.0
2,300,118	-		BPHYT_RS30060	0.75	+1.2
2,300,744	+		BPHYT_RS30065	0.32	-2.0
2,301,077	-		BPHYT_RS30065	0.71	+0.3