Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29610

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,197,725	-				-0.4
2,197,735	+				-1.8
2,197,737	+				+0.8
2,198,141	+		BPHYT_RS29605	0.46	+0.5
2,198,142	-		BPHYT_RS29605	0.46	+0.4
2,198,488	+				+0.8
2,198,489	-				-1.5
2,198,502	-				-0.1
2,198,613	+				+0.0
2,198,801	+		BPHYT_RS29610	0.26	-0.1
2,198,919	+		BPHYT_RS29610	0.64	-1.1
2,198,920	-		BPHYT_RS29610	0.64	-0.2
2,198,922	-		BPHYT_RS29610	0.65	+0.5
2,199,133	+				+0.6
2,199,133	+				+0.9
2,199,135	+				+0.8
2,199,136	-				-0.2
2,199,217	-				-2.0
2,199,218	+				-0.9
2,199,219	-				-0.1
2,199,219	-				-0.3
2,199,251	-				-0.0
2,199,251	-				-0.8
2,199,307	+				-0.1
2,199,308	-				-0.4
2,199,574	+				-1.7
2,199,575	-				-0.2
2,199,689	+				+0.1
2,199,689	+				-0.5
2,199,690	-				-0.2
2,199,898	+				-0.2
2,199,898	+				-2.0