Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29250

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29245 and BPHYT_RS29250 are separated by 431 nucleotidesBPHYT_RS29250 and BPHYT_RS29255 are separated by 385 nucleotides BPHYT_RS29245: BPHYT_RS29245 - peptidase M23, at 2,116,859 to 2,117,857 _RS29245 BPHYT_RS29250: BPHYT_RS29250 - dihydrodipicolinate synthase, at 2,118,289 to 2,119,212 _RS29250 BPHYT_RS29255: BPHYT_RS29255 - aspartate carbamoyltransferase, at 2,119,598 to 2,120,890 _RS29255 Position (kb) 2118 2119 2120Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2117.399 kb on - strand, within BPHYT_RS29245at 2118.424 kb on + strand, within BPHYT_RS29250at 2118.424 kb on + strand, within BPHYT_RS29250at 2118.908 kb on - strand, within BPHYT_RS29250at 2118.908 kb on - strand, within BPHYT_RS29250at 2120.118 kb on - strand, within BPHYT_RS29255

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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2,117,399 - BPHYT_RS29245 0.54 -1.4
2,118,424 + BPHYT_RS29250 0.15 -2.3
2,118,424 + BPHYT_RS29250 0.15 -2.7
2,118,908 - BPHYT_RS29250 0.67 +2.8
2,118,908 - BPHYT_RS29250 0.67 -1.0
2,120,118 - BPHYT_RS29255 0.40 -1.7

Or see this region's nucleotide sequence