Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28695

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,990,614	+		BPHYT_RS28690	0.57	-0.2
1,991,288	+				+0.4
1,991,289	-				-0.2
1,991,294	+				-1.4
1,991,336	+				-0.2
1,991,336	+				-0.3
1,991,337	-				-0.4
1,991,605	+				-0.9
1,991,643	+				-2.0
1,991,673	-				-0.3
1,991,742	+		BPHYT_RS28695	0.15	+0.2
1,992,052	+		BPHYT_RS28695	0.36	+0.3
1,992,140	+		BPHYT_RS28695	0.42	+0.4
1,992,141	-		BPHYT_RS28695	0.42	+1.6
1,992,181	-		BPHYT_RS28695	0.45	-0.0
1,992,330	+		BPHYT_RS28695	0.55	+0.1
1,992,382	+		BPHYT_RS28695	0.59	-2.5
1,992,771	+		BPHYT_RS28695	0.85	-0.4
1,992,772	-		BPHYT_RS28695	0.85	-0.3
1,992,805	+		BPHYT_RS28695	0.88	-0.7
1,992,805	+		BPHYT_RS28695	0.88	-1.3
1,992,806	-		BPHYT_RS28695	0.88	+0.7
1,992,823	+		BPHYT_RS28695	0.89	+0.4
1,992,824	-		BPHYT_RS28695	0.89	-2.7
1,992,824	-		BPHYT_RS28695	0.89	-0.0
1,992,824	-		BPHYT_RS28695	0.89	+0.5
1,992,870	-				-0.3
1,993,462	+				-0.7
1,993,463	-				-0.9
1,993,493	-				+0.2
1,993,499	-				-0.2
1,993,693	-		BPHYT_RS28705	0.11	-0.2