Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28535

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,957,266	-				-3.1
1,957,837	-		BPHYT_RS28530	0.74	-0.8
1,958,100	+				+1.0
1,958,466	-		BPHYT_RS28535	0.57	-2.1
1,958,749	-				+0.3
1,958,800	+				-1.4
1,958,800	+				+1.1
1,958,803	-				-1.3
1,959,017	-		BPHYT_RS28540	0.24	-0.5
1,959,017	-				+1.1
1,959,250	-		BPHYT_RS28540	0.44	+1.0
1,959,264	+		BPHYT_RS28540	0.45	-1.5
1,959,373	-		BPHYT_RS28540	0.54	+1.0
1,959,453	+		BPHYT_RS28540	0.61	+0.2
1,959,472	-		BPHYT_RS28540	0.63	-1.1
1,959,546	+		BPHYT_RS28540	0.69	-0.2
1,959,652	+		BPHYT_RS28540	0.79	+0.9