Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25595

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25590 and BPHYT_RS25595 are separated by 276 nucleotidesBPHYT_RS25595 and BPHYT_RS25600 are separated by 441 nucleotidesBPHYT_RS25600 and BPHYT_RS25605 overlap by 4 nucleotides BPHYT_RS25590: BPHYT_RS25590 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 1,312,512 to 1,314,602 _RS25590 BPHYT_RS25595: BPHYT_RS25595 - ATPase AAA, at 1,314,879 to 1,316,528 _RS25595 BPHYT_RS25600: BPHYT_RS25600 - hypothetical protein, at 1,316,970 to 1,317,242 _RS25600 BPHYT_RS25605: BPHYT_RS25605 - symporter, at 1,317,239 to 1,318,789 _RS25605 Position (kb) 1314 1315 1316 1317Strain fitness (log2 ratio) -1 0 1at 1313.895 kb on + strand, within BPHYT_RS25590at 1313.896 kb on - strand, within BPHYT_RS25590at 1314.095 kb on + strand, within BPHYT_RS25590at 1315.605 kb on + strand, within BPHYT_RS25595at 1315.785 kb on + strand, within BPHYT_RS25595at 1315.988 kb on + strand, within BPHYT_RS25595at 1316.280 kb on - strand, within BPHYT_RS25595at 1317.251 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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1,313,895 + BPHYT_RS25590 0.66 +0.2
1,313,896 - BPHYT_RS25590 0.66 -0.2
1,314,095 + BPHYT_RS25590 0.76 -0.0
1,315,605 + BPHYT_RS25595 0.44 +1.0
1,315,785 + BPHYT_RS25595 0.55 +1.2
1,315,988 + BPHYT_RS25595 0.67 -1.0
1,316,280 - BPHYT_RS25595 0.85 +0.3
1,317,251 - +1.0

Or see this region's nucleotide sequence