Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25450

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25445 and BPHYT_RS25450 are separated by 100 nucleotidesBPHYT_RS25450 and BPHYT_RS25455 are separated by 47 nucleotides BPHYT_RS25445: BPHYT_RS25445 - alkyl hydroperoxide reductase, at 1,286,463 to 1,287,101 _RS25445 BPHYT_RS25450: BPHYT_RS25450 - membrane protein, at 1,287,202 to 1,288,491 _RS25450 BPHYT_RS25455: BPHYT_RS25455 - hypothetical protein, at 1,288,539 to 1,289,966 _RS25455 Position (kb) 1287 1288 1289Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1286.467 kb on + strandat 1286.499 kb on + strandat 1287.001 kb on + strand, within BPHYT_RS25445at 1287.168 kb on + strandat 1287.857 kb on + strand, within BPHYT_RS25450at 1288.370 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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1,286,467 + +0.7
1,286,499 + -2.2
1,287,001 + BPHYT_RS25445 0.84 +0.3
1,287,168 + +1.1
1,287,857 + BPHYT_RS25450 0.51 +1.3
1,288,370 + +5.4

Or see this region's nucleotide sequence