Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24700

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,109,369	+				-0.3
1,109,369	+				-0.4
1,109,370	-				+1.6
1,109,372	+				-0.3
1,109,372	+				-0.0
1,109,744	-				-3.3
1,109,823	+				-0.9
1,109,823	+				-0.9
1,109,823	+				-0.3
1,109,824	-				-2.3
1,109,824	-				+0.1
1,109,836	-				-0.4
1,109,836	-				-0.5
1,109,865	-				-0.2
1,109,865	-				-0.5
1,109,877	-				-0.0
1,109,927	-				-0.1
1,109,936	+				+0.7
1,109,936	+				-0.4
1,109,936	+				-0.1
1,109,936	+				-1.3
1,109,937	-				+0.4
1,109,937	-				-0.3
1,110,006	+				-0.3
1,110,007	-				+0.6
1,110,016	-				-0.7
1,110,215	+				+0.4
1,110,318	+		BPHYT_RS24700	0.14	+0.5
1,110,318	+		BPHYT_RS24700	0.14	+0.7
1,110,318	+		BPHYT_RS24700	0.14	-1.2
1,110,462	+		BPHYT_RS24700	0.36	-0.2
1,110,463	-		BPHYT_RS24700	0.37	-1.7
1,110,463	-		BPHYT_RS24700	0.37	-0.2
1,110,463	-		BPHYT_RS24700	0.37	-0.8
1,110,477	+		BPHYT_RS24700	0.39	+0.3
1,110,477	+		BPHYT_RS24700	0.39	-0.9
1,110,478	-		BPHYT_RS24700	0.39	+3.3
1,110,489	+		BPHYT_RS24700	0.41	+0.5
1,110,490	-		BPHYT_RS24700	0.41	-2.0
1,110,500	+		BPHYT_RS24700	0.42	-0.2
1,110,500	+		BPHYT_RS24700	0.42	-0.7
1,110,500	+		BPHYT_RS24700	0.42	-0.6
1,110,501	-		BPHYT_RS24700	0.43	-0.5
1,110,501	-		BPHYT_RS24700	0.43	-0.9
1,111,034	+				+1.0
1,111,035	-				-0.2
1,111,039	-				-0.8
1,111,039	-				+0.1
1,111,078	+				-1.2
1,111,078	+				-0.8
1,111,078	+				-0.4
1,111,078	+				-0.9
1,111,079	+				-0.3
1,111,079	-				-3.0
1,111,132	-				-0.3
1,111,143	+				+0.9
1,111,144	-				-1.9
1,111,164	-				-1.0
1,111,287	+		BPHYT_RS24705	0.39	+0.3
1,111,287	+		BPHYT_RS24705	0.39	+1.0
1,111,288	-		BPHYT_RS24705	0.39	-2.1
1,111,288	-		BPHYT_RS24705	0.39	+0.5
1,111,290	-		BPHYT_RS24705	0.40	-1.2
1,111,290	-		BPHYT_RS24705	0.40	+0.5
1,111,318	-		BPHYT_RS24705	0.48	-0.2
1,111,411	-		BPHYT_RS24705	0.75	+0.6
1,111,483	-				-1.4
1,111,494	+				+0.6
1,111,494	+				-0.1
1,111,503	+				-0.1
1,111,806	-				+0.7