Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24685

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,105,968	+		BPHYT_RS24675	0.58	-0.5
1,105,969	-		BPHYT_RS24675	0.58	+0.1
1,105,969	-		BPHYT_RS24675	0.58	+0.0
1,106,249	-		BPHYT_RS24675	0.84	-0.3
1,106,490	-		BPHYT_RS24680	0.19	-1.8
1,106,529	+		BPHYT_RS24680	0.33	-0.5
1,106,529	+		BPHYT_RS24680	0.33	-0.9
1,106,530	-		BPHYT_RS24680	0.34	-0.4
1,106,582	+		BPHYT_RS24680	0.53	-0.1
1,106,816	-				+0.3
1,107,040	+				+0.1
1,107,093	+		BPHYT_RS24685	0.15	+1.7
1,107,094	-		BPHYT_RS24685	0.16	-2.2
1,107,384	+		BPHYT_RS24685	0.48	+0.2
1,107,385	-		BPHYT_RS24685	0.48	-0.1
1,107,509	+		BPHYT_RS24685	0.62	-0.8
1,107,656	-		BPHYT_RS24685	0.78	-0.4
1,108,224	-		BPHYT_RS24690	0.30	+0.1
1,108,409	-		BPHYT_RS24690	0.47	+0.2
1,108,437	+		BPHYT_RS24690	0.49	-0.2
1,108,450	+		BPHYT_RS24690	0.51	+0.2
1,108,450	+		BPHYT_RS24690	0.51	-0.3
1,108,525	+		BPHYT_RS24690	0.57	-0.3
1,108,525	+		BPHYT_RS24690	0.57	-0.8
1,108,525	+		BPHYT_RS24690	0.57	-0.9
1,108,526	-		BPHYT_RS24690	0.58	-0.2
1,108,526	-		BPHYT_RS24690	0.58	-1.7