Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24570 and BPHYT_RS24575 are separated by 17 nucleotides BPHYT_RS24575 and BPHYT_RS24580 are separated by 3 nucleotides BPHYT_RS24580 and BPHYT_RS24585 are separated by 222 nucleotides BPHYT_RS24585 and BPHYT_RS24590 are separated by 116 nucleotides
BPHYT_RS24570: BPHYT_RS24570 - membrane protein, at 1,082,890 to 1,084,050
_RS24570
BPHYT_RS24575: BPHYT_RS24575 - hypothetical protein, at 1,084,068 to 1,084,268
_RS24575
BPHYT_RS24580: BPHYT_RS24580 - hypothetical protein, at 1,084,272 to 1,084,601
_RS24580
BPHYT_RS24585: BPHYT_RS24585 - NUDIX hydrolase, at 1,084,824 to 1,085,411
_RS24585
BPHYT_RS24590: BPHYT_RS24590 - DeoR faimly transcriptional regulator, at 1,085,528 to 1,086,289
_RS24590
Position (kb) 1084
1085 Strain fitness (log2 ratio) -1
0
1
2 at 1083.323 kb on - strand, within BPHYT_RS24570 at 1083.373 kb on + strand, within BPHYT_RS24570 at 1083.415 kb on + strand, within BPHYT_RS24570 at 1083.417 kb on + strand, within BPHYT_RS24570 at 1083.417 kb on + strand, within BPHYT_RS24570 at 1083.418 kb on - strand, within BPHYT_RS24570 at 1083.418 kb on - strand, within BPHYT_RS24570 at 1083.476 kb on - strand, within BPHYT_RS24570 at 1083.508 kb on + strand, within BPHYT_RS24570 at 1083.613 kb on + strand, within BPHYT_RS24570 at 1083.614 kb on - strand, within BPHYT_RS24570 at 1083.647 kb on - strand, within BPHYT_RS24570 at 1083.649 kb on - strand, within BPHYT_RS24570 at 1083.739 kb on + strand, within BPHYT_RS24570 at 1083.786 kb on - strand, within BPHYT_RS24570 at 1083.809 kb on - strand, within BPHYT_RS24570 at 1083.809 kb on - strand, within BPHYT_RS24570 at 1083.823 kb on + strand, within BPHYT_RS24570 at 1083.883 kb on + strand, within BPHYT_RS24570 at 1084.202 kb on + strand, within BPHYT_RS24575 at 1084.242 kb on - strand at 1084.359 kb on - strand, within BPHYT_RS24580 at 1084.737 kb on - strand at 1084.742 kb on + strand at 1084.999 kb on + strand, within BPHYT_RS24585
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 1,083,323 - BPHYT_RS24570 0.37 +0.5 1,083,373 + BPHYT_RS24570 0.42 -0.6 1,083,415 + BPHYT_RS24570 0.45 +1.7 1,083,417 + BPHYT_RS24570 0.45 +2.3 1,083,417 + BPHYT_RS24570 0.45 +0.0 1,083,418 - BPHYT_RS24570 0.45 +0.2 1,083,418 - BPHYT_RS24570 0.45 +0.8 1,083,476 - BPHYT_RS24570 0.50 -1.3 1,083,508 + BPHYT_RS24570 0.53 +1.3 1,083,613 + BPHYT_RS24570 0.62 -0.4 1,083,614 - BPHYT_RS24570 0.62 -0.2 1,083,647 - BPHYT_RS24570 0.65 -0.0 1,083,649 - BPHYT_RS24570 0.65 -0.6 1,083,739 + BPHYT_RS24570 0.73 -0.8 1,083,786 - BPHYT_RS24570 0.77 -1.3 1,083,809 - BPHYT_RS24570 0.79 +0.3 1,083,809 - BPHYT_RS24570 0.79 -0.6 1,083,823 + BPHYT_RS24570 0.80 -0.5 1,083,883 + BPHYT_RS24570 0.86 -0.5 1,084,202 + BPHYT_RS24575 0.67 +1.8 1,084,242 - +1.0 1,084,359 - BPHYT_RS24580 0.26 +0.9 1,084,737 - -0.9 1,084,742 + +0.1 1,084,999 + BPHYT_RS24585 0.30 -0.2
Or see this region's nucleotide sequence