Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23820

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23815 and BPHYT_RS23820 are separated by 202 nucleotidesBPHYT_RS23820 and BPHYT_RS23825 are separated by 170 nucleotidesBPHYT_RS23825 and BPHYT_RS23830 are separated by 190 nucleotides BPHYT_RS23815: BPHYT_RS23815 - LysR family transcriptional regulator, at 909,966 to 910,961 _RS23815 BPHYT_RS23820: BPHYT_RS23820 - fusaric acid resistance protein, at 911,164 to 913,332 _RS23820 BPHYT_RS23825: BPHYT_RS23825 - hypothetical protein, at 913,503 to 913,718 _RS23825 BPHYT_RS23830: BPHYT_RS23830 - acetyl-CoA hydrolase, at 913,909 to 915,423 _RS23830 Position (kb) 911 912 913 914Strain fitness (log2 ratio) -2 -1 0 1 2at 910.240 kb on - strand, within BPHYT_RS23815at 910.448 kb on - strand, within BPHYT_RS23815at 910.550 kb on + strand, within BPHYT_RS23815at 910.645 kb on + strand, within BPHYT_RS23815at 910.747 kb on - strand, within BPHYT_RS23815at 910.754 kb on + strand, within BPHYT_RS23815at 910.755 kb on - strand, within BPHYT_RS23815at 910.755 kb on - strand, within BPHYT_RS23815at 910.755 kb on - strand, within BPHYT_RS23815at 910.755 kb on - strand, within BPHYT_RS23815at 910.755 kb on - strand, within BPHYT_RS23815at 910.944 kb on - strandat 910.956 kb on - strandat 910.971 kb on + strandat 910.971 kb on + strandat 910.972 kb on - strandat 910.990 kb on + strandat 911.058 kb on - strandat 911.068 kb on + strandat 911.068 kb on + strandat 911.079 kb on + strandat 911.079 kb on + strandat 911.080 kb on - strandat 911.080 kb on - strandat 911.503 kb on + strand, within BPHYT_RS23820at 911.504 kb on - strand, within BPHYT_RS23820at 911.504 kb on - strand, within BPHYT_RS23820at 911.504 kb on - strand, within BPHYT_RS23820at 911.504 kb on - strand, within BPHYT_RS23820at 911.515 kb on - strand, within BPHYT_RS23820at 911.693 kb on + strand, within BPHYT_RS23820at 912.052 kb on + strand, within BPHYT_RS23820at 912.238 kb on + strand, within BPHYT_RS23820at 912.278 kb on - strand, within BPHYT_RS23820at 912.303 kb on + strand, within BPHYT_RS23820at 912.334 kb on + strand, within BPHYT_RS23820at 912.556 kb on + strand, within BPHYT_RS23820at 912.571 kb on + strand, within BPHYT_RS23820at 912.571 kb on + strand, within BPHYT_RS23820at 912.571 kb on + strand, within BPHYT_RS23820at 912.572 kb on - strand, within BPHYT_RS23820at 912.572 kb on - strand, within BPHYT_RS23820at 912.572 kb on - strand, within BPHYT_RS23820at 912.572 kb on - strand, within BPHYT_RS23820at 912.572 kb on - strand, within BPHYT_RS23820at 912.572 kb on - strand, within BPHYT_RS23820at 912.577 kb on + strand, within BPHYT_RS23820at 912.733 kb on + strand, within BPHYT_RS23820at 912.876 kb on - strand, within BPHYT_RS23820at 913.373 kb on - strandat 913.430 kb on - strandat 913.431 kb on + strandat 913.432 kb on - strandat 913.486 kb on - strandat 913.607 kb on + strand, within BPHYT_RS23825at 913.649 kb on + strand, within BPHYT_RS23825at 913.650 kb on - strand, within BPHYT_RS23825at 913.704 kb on + strandat 913.736 kb on - strandat 913.745 kb on - strandat 913.745 kb on - strandat 913.745 kb on - strandat 913.890 kb on + strandat 913.912 kb on + strandat 914.301 kb on + strand, within BPHYT_RS23830

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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910,240 - BPHYT_RS23815 0.28 +1.8
910,448 - BPHYT_RS23815 0.48 +0.6
910,550 + BPHYT_RS23815 0.59 -0.2
910,645 + BPHYT_RS23815 0.68 +0.1
910,747 - BPHYT_RS23815 0.78 -1.1
910,754 + BPHYT_RS23815 0.79 +0.1
910,755 - BPHYT_RS23815 0.79 +1.5
910,755 - BPHYT_RS23815 0.79 +0.3
910,755 - BPHYT_RS23815 0.79 -1.2
910,755 - BPHYT_RS23815 0.79 -0.5
910,755 - BPHYT_RS23815 0.79 -1.0
910,944 - +0.5
910,956 - +1.2
910,971 + -0.4
910,971 + -0.1
910,972 - -0.1
910,990 + +0.1
911,058 - -0.4
911,068 + -0.6
911,068 + +0.3
911,079 + +0.7
911,079 + +0.0
911,080 - -1.4
911,080 - -0.1
911,503 + BPHYT_RS23820 0.16 -0.6
911,504 - BPHYT_RS23820 0.16 +0.5
911,504 - BPHYT_RS23820 0.16 -0.5
911,504 - BPHYT_RS23820 0.16 +0.3
911,504 - BPHYT_RS23820 0.16 +0.7
911,515 - BPHYT_RS23820 0.16 -0.1
911,693 + BPHYT_RS23820 0.24 -0.7
912,052 + BPHYT_RS23820 0.41 -0.6
912,238 + BPHYT_RS23820 0.50 -0.8
912,278 - BPHYT_RS23820 0.51 +0.5
912,303 + BPHYT_RS23820 0.53 -0.5
912,334 + BPHYT_RS23820 0.54 +1.2
912,556 + BPHYT_RS23820 0.64 +0.8
912,571 + BPHYT_RS23820 0.65 -0.0
912,571 + BPHYT_RS23820 0.65 +1.1
912,571 + BPHYT_RS23820 0.65 +0.8
912,572 - BPHYT_RS23820 0.65 -0.4
912,572 - BPHYT_RS23820 0.65 +0.1
912,572 - BPHYT_RS23820 0.65 +0.4
912,572 - BPHYT_RS23820 0.65 -0.5
912,572 - BPHYT_RS23820 0.65 -0.3
912,572 - BPHYT_RS23820 0.65 -0.1
912,577 + BPHYT_RS23820 0.65 -0.9
912,733 + BPHYT_RS23820 0.72 +0.3
912,876 - BPHYT_RS23820 0.79 +0.5
913,373 - -0.1
913,430 - -2.0
913,431 + +0.8
913,432 - -0.0
913,486 - -1.3
913,607 + BPHYT_RS23825 0.48 +0.1
913,649 + BPHYT_RS23825 0.68 -0.6
913,650 - BPHYT_RS23825 0.68 +0.1
913,704 + +0.1
913,736 - -0.6
913,745 - +1.7
913,745 - -1.0
913,745 - -0.1
913,890 + -1.5
913,912 + +0.1
914,301 + BPHYT_RS23830 0.26 -0.6

Or see this region's nucleotide sequence