Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23640 and BPHYT_RS23645 are separated by 113 nucleotides BPHYT_RS23645 and BPHYT_RS23650 are separated by 160 nucleotides BPHYT_RS23650 and BPHYT_RS23655 are separated by 90 nucleotides BPHYT_RS23655 and BPHYT_RS23660 are separated by 60 nucleotides
BPHYT_RS23640: BPHYT_RS23640 - hypothetical protein, at 874,774 to 875,472
_RS23640
BPHYT_RS23645: BPHYT_RS23645 - phosphohydrolase, at 875,586 to 876,230
_RS23645
BPHYT_RS23650: BPHYT_RS23650 - hypothetical protein, at 876,391 to 876,729
_RS23650
BPHYT_RS23655: BPHYT_RS23655 - peroxiredoxin, at 876,820 to 877,296
_RS23655
BPHYT_RS23660: BPHYT_RS23660 - manganese transporter, at 877,357 to 879,015
_RS23660
Position (kb) 876
877 Strain fitness (log2 ratio) -2
-1
0
1
2 at 875.501 kb on + strand at 875.560 kb on - strand at 875.770 kb on + strand, within BPHYT_RS23645 at 875.770 kb on + strand, within BPHYT_RS23645 at 875.771 kb on - strand, within BPHYT_RS23645 at 876.037 kb on - strand, within BPHYT_RS23645 at 876.170 kb on - strand at 876.260 kb on + strand at 876.324 kb on + strand at 876.325 kb on - strand at 876.327 kb on + strand at 876.412 kb on - strand at 876.519 kb on + strand, within BPHYT_RS23650 at 876.727 kb on + strand at 876.728 kb on - strand at 876.827 kb on - strand at 876.837 kb on + strand at 876.838 kb on - strand at 876.841 kb on + strand at 876.841 kb on + strand at 876.842 kb on - strand at 876.842 kb on - strand at 876.842 kb on - strand at 877.232 kb on - strand, within BPHYT_RS23655 at 877.696 kb on + strand, within BPHYT_RS23660 at 877.696 kb on + strand, within BPHYT_RS23660 at 877.697 kb on - strand, within BPHYT_RS23660
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 875,501 + -0.5 875,560 - -2.3 875,770 + BPHYT_RS23645 0.29 -0.6 875,770 + BPHYT_RS23645 0.29 +0.3 875,771 - BPHYT_RS23645 0.29 -0.1 876,037 - BPHYT_RS23645 0.70 -0.3 876,170 - -2.4 876,260 + +0.4 876,324 + +1.5 876,325 - -0.1 876,327 + -1.3 876,412 - -0.2 876,519 + BPHYT_RS23650 0.38 -2.0 876,727 + -0.2 876,728 - -0.2 876,827 - +0.1 876,837 + +1.2 876,838 - +2.0 876,841 + -1.1 876,841 + -0.8 876,842 - -0.9 876,842 - -0.2 876,842 - -0.1 877,232 - BPHYT_RS23655 0.86 -1.5 877,696 + BPHYT_RS23660 0.20 -0.8 877,696 + BPHYT_RS23660 0.20 +0.2 877,697 - BPHYT_RS23660 0.20 +0.8
Or see this region's nucleotide sequence