Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22625 and BPHYT_RS22630 are separated by 398 nucleotides BPHYT_RS22630 and BPHYT_RS22635 are separated by 20 nucleotides
BPHYT_RS22625: BPHYT_RS22625 - MFS transporter, at 632,171 to 633,472
_RS22625
BPHYT_RS22630: BPHYT_RS22630 - transcriptional regulator, at 633,871 to 634,611
_RS22630
BPHYT_RS22635: BPHYT_RS22635 - dihydrodipicolinate synthase, at 634,632 to 635,537
_RS22635
Position (kb) 633
634
635 Strain fitness (log2 ratio) -2
-1
0
1 at 632.988 kb on + strand, within BPHYT_RS22625 at 632.989 kb on - strand, within BPHYT_RS22625 at 633.120 kb on + strand, within BPHYT_RS22625 at 633.120 kb on + strand, within BPHYT_RS22625 at 633.317 kb on + strand, within BPHYT_RS22625 at 633.317 kb on + strand, within BPHYT_RS22625 at 633.318 kb on - strand, within BPHYT_RS22625 at 633.318 kb on - strand, within BPHYT_RS22625 at 633.507 kb on + strand at 633.508 kb on - strand at 633.508 kb on - strand at 633.520 kb on + strand at 633.664 kb on + strand at 633.665 kb on - strand at 633.751 kb on + strand at 633.791 kb on - strand at 633.794 kb on + strand at 633.795 kb on - strand at 633.800 kb on - strand at 633.853 kb on + strand at 633.858 kb on + strand at 633.859 kb on - strand at 633.859 kb on - strand at 633.876 kb on + strand at 633.876 kb on + strand at 633.959 kb on - strand, within BPHYT_RS22630 at 634.165 kb on + strand, within BPHYT_RS22630 at 634.165 kb on + strand, within BPHYT_RS22630 at 634.232 kb on - strand, within BPHYT_RS22630 at 634.525 kb on - strand, within BPHYT_RS22630 at 634.831 kb on + strand, within BPHYT_RS22635 at 634.832 kb on - strand, within BPHYT_RS22635 at 634.876 kb on + strand, within BPHYT_RS22635 at 634.877 kb on - strand, within BPHYT_RS22635 at 634.909 kb on - strand, within BPHYT_RS22635 at 635.132 kb on - strand, within BPHYT_RS22635 at 635.207 kb on - strand, within BPHYT_RS22635 at 635.472 kb on + strand at 635.473 kb on - strand at 635.514 kb on + strand at 635.529 kb on - strand at 635.576 kb on - strand at 635.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 632,988 + BPHYT_RS22625 0.63 +0.3 632,989 - BPHYT_RS22625 0.63 +1.0 633,120 + BPHYT_RS22625 0.73 -0.7 633,120 + BPHYT_RS22625 0.73 -0.3 633,317 + BPHYT_RS22625 0.88 +0.0 633,317 + BPHYT_RS22625 0.88 -0.1 633,318 - BPHYT_RS22625 0.88 -1.3 633,318 - BPHYT_RS22625 0.88 +0.5 633,507 + -0.4 633,508 - -0.4 633,508 - -0.7 633,520 + -0.6 633,664 + +0.2 633,665 - -1.6 633,751 + -0.7 633,791 - -0.9 633,794 + -1.1 633,795 - -0.6 633,800 - -1.7 633,853 + -0.5 633,858 + -0.0 633,859 - +0.4 633,859 - +0.4 633,876 + -0.4 633,876 + -2.4 633,959 - BPHYT_RS22630 0.12 -0.9 634,165 + BPHYT_RS22630 0.40 +0.9 634,165 + BPHYT_RS22630 0.40 -1.2 634,232 - BPHYT_RS22630 0.49 -0.8 634,525 - BPHYT_RS22630 0.88 -0.7 634,831 + BPHYT_RS22635 0.22 +1.2 634,832 - BPHYT_RS22635 0.22 +0.4 634,876 + BPHYT_RS22635 0.27 +0.8 634,877 - BPHYT_RS22635 0.27 -0.5 634,909 - BPHYT_RS22635 0.31 -1.0 635,132 - BPHYT_RS22635 0.55 -0.3 635,207 - BPHYT_RS22635 0.63 -0.1 635,472 + -0.6 635,473 - +0.7 635,514 + -0.8 635,529 - -0.1 635,576 - +0.6 635,576 - +0.5
Or see this region's nucleotide sequence