Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22255

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22250 and BPHYT_RS22255 are separated by 5 nucleotidesBPHYT_RS22255 and BPHYT_RS22260 are separated by 58 nucleotidesBPHYT_RS22260 and BPHYT_RS22265 are separated by 106 nucleotides BPHYT_RS22250: BPHYT_RS22250 - D-amino acid dehydrogenase, at 549,665 to 550,909 _RS22250 BPHYT_RS22255: BPHYT_RS22255 - hypothetical protein, at 550,915 to 551,259 _RS22255 BPHYT_RS22260: BPHYT_RS22260 - hypothetical protein, at 551,318 to 551,608 _RS22260 BPHYT_RS22265: BPHYT_RS22265 - hypothetical protein, at 551,715 to 552,506 _RS22265 Position (kb) 550 551 552Strain fitness (log2 ratio) -2 -1 0 1at 550.087 kb on - strand, within BPHYT_RS22250at 550.917 kb on - strandat 550.917 kb on - strandat 550.919 kb on - strandat 550.919 kb on - strandat 551.070 kb on - strand, within BPHYT_RS22255at 551.267 kb on + strandat 551.345 kb on + strandat 551.516 kb on - strand, within BPHYT_RS22260at 551.606 kb on + strandat 551.607 kb on - strandat 551.623 kb on + strandat 551.715 kb on - strandat 551.768 kb on - strandat 551.768 kb on - strandat 551.940 kb on + strand, within BPHYT_RS22265at 551.976 kb on - strand, within BPHYT_RS22265

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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550,087 - BPHYT_RS22250 0.34 -0.1
550,917 - +0.6
550,917 - -0.1
550,919 - +1.2
550,919 - -0.2
551,070 - BPHYT_RS22255 0.45 +0.7
551,267 + +0.5
551,345 + -0.7
551,516 - BPHYT_RS22260 0.68 -0.3
551,606 + -2.2
551,607 - -0.3
551,623 + -0.2
551,715 - +0.8
551,768 - -0.8
551,768 - -0.0
551,940 + BPHYT_RS22265 0.28 +0.6
551,976 - BPHYT_RS22265 0.33 -0.8

Or see this region's nucleotide sequence