Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21360 and BPHYT_RS21365 are separated by 127 nucleotides BPHYT_RS21365 and BPHYT_RS21370 are separated by 291 nucleotides BPHYT_RS21370 and BPHYT_RS21375 are separated by 156 nucleotides
BPHYT_RS21360: BPHYT_RS21360 - gamma-glutamyltranspeptidase, at 350,909 to 352,642
_RS21360
BPHYT_RS21365: BPHYT_RS21365 - serine protease, at 352,770 to 353,813
_RS21365
BPHYT_RS21370: BPHYT_RS21370 - glyoxalase, at 354,105 to 354,503
_RS21370
BPHYT_RS21375: BPHYT_RS21375 - hypothetical protein, at 354,660 to 355,586
_RS21375
Position (kb) 352
353
354 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 351.854 kb on + strand, within BPHYT_RS21360 at 351.854 kb on + strand, within BPHYT_RS21360 at 351.855 kb on - strand, within BPHYT_RS21360 at 351.855 kb on - strand, within BPHYT_RS21360 at 351.929 kb on + strand, within BPHYT_RS21360 at 351.929 kb on + strand, within BPHYT_RS21360 at 351.931 kb on + strand at 351.965 kb on + strand, within BPHYT_RS21360 at 351.965 kb on + strand, within BPHYT_RS21360 at 351.965 kb on + strand, within BPHYT_RS21360 at 351.965 kb on + strand, within BPHYT_RS21360 at 351.967 kb on + strand, within BPHYT_RS21360 at 352.111 kb on + strand, within BPHYT_RS21360 at 352.115 kb on + strand, within BPHYT_RS21360 at 352.115 kb on + strand, within BPHYT_RS21360 at 352.116 kb on - strand, within BPHYT_RS21360 at 352.116 kb on - strand, within BPHYT_RS21360 at 352.116 kb on - strand, within BPHYT_RS21360 at 352.116 kb on - strand, within BPHYT_RS21360 at 352.219 kb on + strand, within BPHYT_RS21360 at 352.219 kb on + strand, within BPHYT_RS21360 at 352.220 kb on - strand, within BPHYT_RS21360 at 352.317 kb on + strand, within BPHYT_RS21360 at 352.388 kb on + strand, within BPHYT_RS21360 at 352.394 kb on + strand, within BPHYT_RS21360 at 352.479 kb on - strand at 352.649 kb on + strand at 352.740 kb on + strand at 352.908 kb on - strand, within BPHYT_RS21365 at 352.925 kb on + strand, within BPHYT_RS21365 at 352.926 kb on - strand at 352.986 kb on + strand, within BPHYT_RS21365 at 353.014 kb on + strand, within BPHYT_RS21365 at 353.065 kb on + strand, within BPHYT_RS21365 at 353.066 kb on - strand, within BPHYT_RS21365 at 353.066 kb on - strand, within BPHYT_RS21365 at 353.066 kb on - strand, within BPHYT_RS21365 at 353.172 kb on - strand, within BPHYT_RS21365 at 353.261 kb on - strand, within BPHYT_RS21365 at 353.310 kb on + strand, within BPHYT_RS21365 at 353.311 kb on - strand, within BPHYT_RS21365 at 353.311 kb on - strand, within BPHYT_RS21365 at 353.514 kb on - strand, within BPHYT_RS21365 at 353.544 kb on - strand, within BPHYT_RS21365 at 353.558 kb on - strand, within BPHYT_RS21365 at 354.048 kb on - strand at 354.351 kb on + strand, within BPHYT_RS21370 at 354.352 kb on - strand, within BPHYT_RS21370 at 354.401 kb on - strand, within BPHYT_RS21370 at 354.445 kb on - strand, within BPHYT_RS21370
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 351,854 + BPHYT_RS21360 0.54 -0.7 351,854 + BPHYT_RS21360 0.54 -0.6 351,855 - BPHYT_RS21360 0.55 -1.4 351,855 - BPHYT_RS21360 0.55 +0.6 351,929 + BPHYT_RS21360 0.59 +0.1 351,929 + BPHYT_RS21360 0.59 +0.0 351,931 + -3.6 351,965 + BPHYT_RS21360 0.61 +0.1 351,965 + BPHYT_RS21360 0.61 -0.0 351,965 + BPHYT_RS21360 0.61 -0.0 351,965 + BPHYT_RS21360 0.61 +0.1 351,967 + BPHYT_RS21360 0.61 -0.5 352,111 + BPHYT_RS21360 0.69 -1.9 352,115 + BPHYT_RS21360 0.70 +0.5 352,115 + BPHYT_RS21360 0.70 +0.8 352,116 - BPHYT_RS21360 0.70 -0.4 352,116 - BPHYT_RS21360 0.70 +0.8 352,116 - BPHYT_RS21360 0.70 -2.7 352,116 - BPHYT_RS21360 0.70 -0.6 352,219 + BPHYT_RS21360 0.76 -1.8 352,219 + BPHYT_RS21360 0.76 -0.5 352,220 - BPHYT_RS21360 0.76 +0.5 352,317 + BPHYT_RS21360 0.81 +0.6 352,388 + BPHYT_RS21360 0.85 +0.7 352,394 + BPHYT_RS21360 0.86 +0.0 352,479 - -0.1 352,649 + +0.6 352,740 + +0.3 352,908 - BPHYT_RS21365 0.13 -0.6 352,925 + BPHYT_RS21365 0.15 -0.8 352,926 - -1.7 352,986 + BPHYT_RS21365 0.21 +0.2 353,014 + BPHYT_RS21365 0.23 +1.1 353,065 + BPHYT_RS21365 0.28 +0.5 353,066 - BPHYT_RS21365 0.28 +0.1 353,066 - BPHYT_RS21365 0.28 -1.1 353,066 - BPHYT_RS21365 0.28 +0.3 353,172 - BPHYT_RS21365 0.39 -0.7 353,261 - BPHYT_RS21365 0.47 -0.8 353,310 + BPHYT_RS21365 0.52 -0.2 353,311 - BPHYT_RS21365 0.52 -1.0 353,311 - BPHYT_RS21365 0.52 +0.1 353,514 - BPHYT_RS21365 0.71 -0.3 353,544 - BPHYT_RS21365 0.74 -2.1 353,558 - BPHYT_RS21365 0.75 -0.9 354,048 - -1.1 354,351 + BPHYT_RS21370 0.62 -0.1 354,352 - BPHYT_RS21370 0.62 -1.0 354,401 - BPHYT_RS21370 0.74 -0.3 354,445 - BPHYT_RS21370 0.85 -0.1
Or see this region's nucleotide sequence