Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21210 and BPHYT_RS21215 are separated by 130 nucleotides BPHYT_RS21215 and BPHYT_RS21220 are separated by 403 nucleotides
BPHYT_RS21210: BPHYT_RS21210 - hypothetical protein, at 320,572 to 321,891
_RS21210
BPHYT_RS21215: BPHYT_RS21215 - Crp/Fnr family transcriptional regulator, at 322,022 to 322,678
_RS21215
BPHYT_RS21220: BPHYT_RS21220 - universal stress protein A, at 323,082 to 323,549
_RS21220
Position (kb) 322
323 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 321.208 kb on - strand, within BPHYT_RS21210 at 321.407 kb on - strand, within BPHYT_RS21210 at 321.422 kb on + strand, within BPHYT_RS21210 at 321.422 kb on + strand, within BPHYT_RS21210 at 321.423 kb on - strand, within BPHYT_RS21210 at 321.749 kb on + strand, within BPHYT_RS21210 at 322.023 kb on + strand at 322.024 kb on - strand at 322.324 kb on + strand, within BPHYT_RS21215 at 322.324 kb on + strand, within BPHYT_RS21215 at 322.324 kb on + strand, within BPHYT_RS21215 at 322.324 kb on + strand, within BPHYT_RS21215 at 322.325 kb on - strand, within BPHYT_RS21215 at 322.325 kb on - strand, within BPHYT_RS21215 at 322.545 kb on + strand, within BPHYT_RS21215 at 322.546 kb on - strand, within BPHYT_RS21215 at 322.546 kb on - strand, within BPHYT_RS21215 at 322.575 kb on + strand, within BPHYT_RS21215 at 322.813 kb on + strand at 322.813 kb on + strand at 322.813 kb on + strand at 322.845 kb on + strand at 322.846 kb on - strand at 322.991 kb on + strand at 323.416 kb on + strand, within BPHYT_RS21220 at 323.416 kb on + strand, within BPHYT_RS21220 at 323.417 kb on - strand, within BPHYT_RS21220 at 323.417 kb on - strand, within BPHYT_RS21220 at 323.417 kb on - strand, within BPHYT_RS21220 at 323.440 kb on + strand, within BPHYT_RS21220 at 323.440 kb on + strand, within BPHYT_RS21220 at 323.441 kb on - strand, within BPHYT_RS21220 at 323.442 kb on + strand, within BPHYT_RS21220 at 323.442 kb on + strand, within BPHYT_RS21220 at 323.545 kb on + strand at 323.545 kb on + strand at 323.545 kb on + strand at 323.545 kb on + strand at 323.545 kb on + strand at 323.546 kb on - strand at 323.546 kb on - strand at 323.627 kb on + strand at 323.627 kb on + strand at 323.628 kb on - strand at 323.628 kb on - strand at 323.670 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 321,208 - BPHYT_RS21210 0.48 +1.4 321,407 - BPHYT_RS21210 0.63 -1.7 321,422 + BPHYT_RS21210 0.64 +0.0 321,422 + BPHYT_RS21210 0.64 -0.1 321,423 - BPHYT_RS21210 0.64 -0.2 321,749 + BPHYT_RS21210 0.89 +0.7 322,023 + -0.5 322,024 - -0.3 322,324 + BPHYT_RS21215 0.46 -0.3 322,324 + BPHYT_RS21215 0.46 -1.5 322,324 + BPHYT_RS21215 0.46 +1.5 322,324 + BPHYT_RS21215 0.46 +1.7 322,325 - BPHYT_RS21215 0.46 -1.6 322,325 - BPHYT_RS21215 0.46 -3.7 322,545 + BPHYT_RS21215 0.80 -1.4 322,546 - BPHYT_RS21215 0.80 -0.6 322,546 - BPHYT_RS21215 0.80 -0.4 322,575 + BPHYT_RS21215 0.84 -0.9 322,813 + -1.5 322,813 + +2.9 322,813 + -1.8 322,845 + -1.9 322,846 - +0.5 322,991 + -0.5 323,416 + BPHYT_RS21220 0.71 -0.4 323,416 + BPHYT_RS21220 0.71 -0.3 323,417 - BPHYT_RS21220 0.72 +0.7 323,417 - BPHYT_RS21220 0.72 +0.5 323,417 - BPHYT_RS21220 0.72 +1.1 323,440 + BPHYT_RS21220 0.76 +0.0 323,440 + BPHYT_RS21220 0.76 +0.5 323,441 - BPHYT_RS21220 0.77 +0.6 323,442 + BPHYT_RS21220 0.77 -1.7 323,442 + BPHYT_RS21220 0.77 -0.5 323,545 + -0.5 323,545 + -0.2 323,545 + +1.4 323,545 + -1.1 323,545 + -0.1 323,546 - +0.0 323,546 - -2.4 323,627 + -0.3 323,627 + -0.1 323,628 - -1.9 323,628 - -0.9 323,670 + -1.5
Or see this region's nucleotide sequence