Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21135

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21125 and BPHYT_RS21130 overlap by 4 nucleotidesBPHYT_RS21130 and BPHYT_RS21135 overlap by 4 nucleotidesBPHYT_RS21135 and BPHYT_RS21140 are separated by 32 nucleotides BPHYT_RS21125: BPHYT_RS21125 - hypothetical protein, at 301,133 to 301,774 _RS21125 BPHYT_RS21130: BPHYT_RS21130 - F420-dependent oxidoreductase, at 301,771 to 302,550 _RS21130 BPHYT_RS21135: BPHYT_RS21135 - NADH-ubiquinone oxidoreductase subunit 6, at 302,547 to 303,227 _RS21135 BPHYT_RS21140: BPHYT_RS21140 - methylenetetrahydromethanopterin reductase, at 303,260 to 304,261 _RS21140 Position (kb) 302 303 304Strain fitness (log2 ratio) -2 -1 0 1at 301.809 kb on - strandat 301.969 kb on + strand, within BPHYT_RS21130at 301.969 kb on + strand, within BPHYT_RS21130at 301.969 kb on + strand, within BPHYT_RS21130at 302.621 kb on - strand, within BPHYT_RS21135at 302.692 kb on + strand, within BPHYT_RS21135at 302.693 kb on - strand, within BPHYT_RS21135at 302.698 kb on + strand, within BPHYT_RS21135at 302.698 kb on + strand, within BPHYT_RS21135at 302.944 kb on + strand, within BPHYT_RS21135at 302.945 kb on - strand, within BPHYT_RS21135at 302.945 kb on - strand, within BPHYT_RS21135at 302.945 kb on - strand, within BPHYT_RS21135at 303.225 kb on + strandat 303.225 kb on + strandat 303.226 kb on - strandat 303.975 kb on - strand, within BPHYT_RS21140at 304.038 kb on - strand, within BPHYT_RS21140at 304.190 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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301,809 - -1.1
301,969 + BPHYT_RS21130 0.25 -1.7
301,969 + BPHYT_RS21130 0.25 +0.4
301,969 + BPHYT_RS21130 0.25 -2.1
302,621 - BPHYT_RS21135 0.11 -0.4
302,692 + BPHYT_RS21135 0.21 +0.3
302,693 - BPHYT_RS21135 0.21 -2.1
302,698 + BPHYT_RS21135 0.22 -0.3
302,698 + BPHYT_RS21135 0.22 +0.0
302,944 + BPHYT_RS21135 0.58 -0.5
302,945 - BPHYT_RS21135 0.58 -0.5
302,945 - BPHYT_RS21135 0.58 +0.2
302,945 - BPHYT_RS21135 0.58 +0.5
303,225 + -0.0
303,225 + +0.0
303,226 - -1.1
303,975 - BPHYT_RS21140 0.71 -0.6
304,038 - BPHYT_RS21140 0.78 +0.5
304,190 + +0.2

Or see this region's nucleotide sequence