Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21055

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21050 and BPHYT_RS21055 are separated by 2 nucleotidesBPHYT_RS21055 and BPHYT_RS21060 are separated by 202 nucleotides BPHYT_RS21050: BPHYT_RS21050 - aldehyde-activating protein, at 283,325 to 283,900 _RS21050 BPHYT_RS21055: BPHYT_RS21055 - S-formylglutathione hydrolase, at 283,903 to 284,733 _RS21055 BPHYT_RS21060: BPHYT_RS21060 - hypothetical protein, at 284,936 to 286,408 _RS21060 Position (kb) 283 284 285Strain fitness (log2 ratio) -1 0 1 2 3at 282.921 kb on + strandat 282.970 kb on + strandat 282.979 kb on + strandat 282.979 kb on + strandat 282.979 kb on + strandat 283.080 kb on + strandat 283.297 kb on + strandat 283.301 kb on - strandat 283.304 kb on - strandat 283.398 kb on + strand, within BPHYT_RS21050at 283.398 kb on + strand, within BPHYT_RS21050at 283.474 kb on + strand, within BPHYT_RS21050at 283.632 kb on - strand, within BPHYT_RS21050at 283.831 kb on - strand, within BPHYT_RS21050at 284.007 kb on + strand, within BPHYT_RS21055at 284.131 kb on - strand, within BPHYT_RS21055at 284.264 kb on - strand, within BPHYT_RS21055at 284.497 kb on + strand, within BPHYT_RS21055at 284.668 kb on - strandat 284.668 kb on - strandat 284.675 kb on - strandat 284.810 kb on - strandat 285.011 kb on - strandat 285.257 kb on + strand, within BPHYT_RS21060at 285.262 kb on - strand, within BPHYT_RS21060at 285.294 kb on + strand, within BPHYT_RS21060at 285.295 kb on - strand, within BPHYT_RS21060

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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282,921 + +0.2
282,970 + -1.1
282,979 + -0.9
282,979 + +0.3
282,979 + -0.6
283,080 + +1.7
283,297 + +0.3
283,301 - +0.1
283,304 - +0.2
283,398 + BPHYT_RS21050 0.13 +0.5
283,398 + BPHYT_RS21050 0.13 +0.4
283,474 + BPHYT_RS21050 0.26 +1.3
283,632 - BPHYT_RS21050 0.53 -0.7
283,831 - BPHYT_RS21050 0.88 +0.0
284,007 + BPHYT_RS21055 0.13 +3.1
284,131 - BPHYT_RS21055 0.27 -0.6
284,264 - BPHYT_RS21055 0.43 +1.0
284,497 + BPHYT_RS21055 0.71 +0.6
284,668 - +0.2
284,668 - +1.3
284,675 - +1.6
284,810 - -1.6
285,011 - +0.7
285,257 + BPHYT_RS21060 0.22 +0.4
285,262 - BPHYT_RS21060 0.22 +0.6
285,294 + BPHYT_RS21060 0.24 +0.5
285,295 - BPHYT_RS21060 0.24 +0.5

Or see this region's nucleotide sequence