Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21040

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21035 and BPHYT_RS21040 overlap by 4 nucleotidesBPHYT_RS21040 and BPHYT_RS21045 are separated by 178 nucleotides BPHYT_RS21035: BPHYT_RS21035 - ABC transporter permease, at 279,463 to 280,617 _RS21035 BPHYT_RS21040: BPHYT_RS21040 - ABC transporter permease, at 280,614 to 281,540 _RS21040 BPHYT_RS21045: BPHYT_RS21045 - bis(5'-nucleosyl)-tetraphosphatase, at 281,719 to 282,801 _RS21045 Position (kb) 280 281 282Strain fitness (log2 ratio) -1 0 1at 279.723 kb on - strand, within BPHYT_RS21035at 280.018 kb on - strand, within BPHYT_RS21035at 280.018 kb on - strand, within BPHYT_RS21035at 280.219 kb on + strand, within BPHYT_RS21035at 281.374 kb on + strand, within BPHYT_RS21040at 281.831 kb on - strand, within BPHYT_RS21045at 281.977 kb on - strand, within BPHYT_RS21045at 282.139 kb on + strand, within BPHYT_RS21045

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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279,723 - BPHYT_RS21035 0.23 -0.1
280,018 - BPHYT_RS21035 0.48 +0.6
280,018 - BPHYT_RS21035 0.48 +0.3
280,219 + BPHYT_RS21035 0.65 +1.2
281,374 + BPHYT_RS21040 0.82 +1.4
281,831 - BPHYT_RS21045 0.10 +0.3
281,977 - BPHYT_RS21045 0.24 -0.5
282,139 + BPHYT_RS21045 0.39 +1.3

Or see this region's nucleotide sequence