Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20610

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20605 and BPHYT_RS20610 are separated by 39 nucleotidesBPHYT_RS20610 and BPHYT_RS20615 are separated by 165 nucleotides BPHYT_RS20605: BPHYT_RS20605 - LysR family transcriptional regulator, at 181,701 to 182,837 _RS20605 BPHYT_RS20610: BPHYT_RS20610 - LysR family transcriptional regulator, at 182,877 to 183,788 _RS20610 BPHYT_RS20615: BPHYT_RS20615 - 2-nitropropane dioxygenase, at 183,954 to 185,054 _RS20615 Position (kb) 182 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1at 182.204 kb on - strand, within BPHYT_RS20605at 182.227 kb on - strand, within BPHYT_RS20605at 182.496 kb on + strand, within BPHYT_RS20605at 182.496 kb on + strand, within BPHYT_RS20605at 182.497 kb on - strand, within BPHYT_RS20605at 182.652 kb on + strand, within BPHYT_RS20605at 182.878 kb on + strandat 182.879 kb on - strandat 183.043 kb on + strand, within BPHYT_RS20610at 183.112 kb on + strand, within BPHYT_RS20610at 183.113 kb on - strand, within BPHYT_RS20610at 183.197 kb on - strand, within BPHYT_RS20610at 183.466 kb on + strand, within BPHYT_RS20610at 183.467 kb on - strand, within BPHYT_RS20610at 183.578 kb on - strand, within BPHYT_RS20610at 183.745 kb on - strandat 183.924 kb on + strandat 183.924 kb on + strandat 183.924 kb on + strandat 183.924 kb on + strandat 183.925 kb on - strandat 183.925 kb on - strandat 183.929 kb on + strandat 183.930 kb on - strandat 184.257 kb on + strand, within BPHYT_RS20615at 184.294 kb on - strand, within BPHYT_RS20615at 184.294 kb on - strand, within BPHYT_RS20615at 184.499 kb on + strand, within BPHYT_RS20615at 184.499 kb on + strand, within BPHYT_RS20615

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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182,204 - BPHYT_RS20605 0.44 +1.0
182,227 - BPHYT_RS20605 0.46 -0.1
182,496 + BPHYT_RS20605 0.70 -1.4
182,496 + BPHYT_RS20605 0.70 +0.3
182,497 - BPHYT_RS20605 0.70 -0.5
182,652 + BPHYT_RS20605 0.84 -0.9
182,878 + +0.9
182,879 - -0.5
183,043 + BPHYT_RS20610 0.18 +0.5
183,112 + BPHYT_RS20610 0.26 +1.5
183,113 - BPHYT_RS20610 0.26 -0.1
183,197 - BPHYT_RS20610 0.35 +0.2
183,466 + BPHYT_RS20610 0.65 +1.7
183,467 - BPHYT_RS20610 0.65 +0.0
183,578 - BPHYT_RS20610 0.77 +1.6
183,745 - +0.1
183,924 + -2.8
183,924 + -0.1
183,924 + -0.2
183,924 + +0.0
183,925 - -0.0
183,925 - +0.2
183,929 + -0.4
183,930 - -3.3
184,257 + BPHYT_RS20615 0.28 +0.8
184,294 - BPHYT_RS20615 0.31 -1.0
184,294 - BPHYT_RS20615 0.31 -0.1
184,499 + BPHYT_RS20615 0.50 -0.6
184,499 + BPHYT_RS20615 0.50 +0.3

Or see this region's nucleotide sequence