Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20515 and BPHYT_RS20520 are separated by 232 nucleotides BPHYT_RS20520 and BPHYT_RS20525 are separated by 76 nucleotides
BPHYT_RS20515: BPHYT_RS20515 - alpha/beta hydrolase, at 164,916 to 165,776
_RS20515
BPHYT_RS20520: BPHYT_RS20520 - transcriptional regulator, at 166,009 to 166,908
_RS20520
BPHYT_RS20525: BPHYT_RS20525 - esterase, at 166,985 to 168,571
_RS20525
Position (kb) 166
167 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 165.067 kb on + strand, within BPHYT_RS20515 at 165.128 kb on - strand, within BPHYT_RS20515 at 165.322 kb on + strand, within BPHYT_RS20515 at 165.712 kb on + strand at 165.832 kb on + strand at 165.914 kb on + strand at 165.914 kb on + strand at 165.914 kb on + strand at 165.914 kb on + strand at 165.914 kb on + strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.919 kb on + strand at 165.973 kb on + strand at 165.979 kb on + strand at 165.980 kb on - strand at 165.980 kb on - strand at 166.031 kb on - strand at 166.478 kb on - strand, within BPHYT_RS20520 at 166.821 kb on + strand at 166.822 kb on - strand at 166.833 kb on + strand at 166.834 kb on - strand at 166.920 kb on + strand at 166.924 kb on + strand at 166.925 kb on - strand at 166.927 kb on - strand at 166.992 kb on + strand at 166.992 kb on + strand at 166.992 kb on + strand at 166.992 kb on + strand at 166.992 kb on + strand at 166.993 kb on - strand at 166.993 kb on - strand at 167.194 kb on - strand, within BPHYT_RS20525 at 167.194 kb on - strand, within BPHYT_RS20525 at 167.266 kb on + strand, within BPHYT_RS20525 at 167.343 kb on - strand, within BPHYT_RS20525 at 167.386 kb on + strand, within BPHYT_RS20525 at 167.450 kb on + strand, within BPHYT_RS20525 at 167.450 kb on + strand, within BPHYT_RS20525 at 167.451 kb on - strand, within BPHYT_RS20525 at 167.466 kb on - strand, within BPHYT_RS20525 at 167.466 kb on - strand, within BPHYT_RS20525 at 167.486 kb on + strand, within BPHYT_RS20525 at 167.486 kb on + strand, within BPHYT_RS20525 at 167.741 kb on + strand, within BPHYT_RS20525 at 167.848 kb on + strand, within BPHYT_RS20525 at 167.849 kb on - strand, within BPHYT_RS20525 at 167.852 kb on + strand, within BPHYT_RS20525 at 167.873 kb on + strand, within BPHYT_RS20525 at 167.874 kb on - strand, within BPHYT_RS20525
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 165,067 + BPHYT_RS20515 0.18 -0.2 165,128 - BPHYT_RS20515 0.25 -0.2 165,322 + BPHYT_RS20515 0.47 +2.1 165,712 + -0.1 165,832 + -0.3 165,914 + -0.3 165,914 + -0.3 165,914 + -1.3 165,914 + -0.5 165,914 + -0.3 165,915 - -0.1 165,915 - -0.1 165,915 - +0.7 165,915 - -1.8 165,915 - -0.8 165,915 - -0.4 165,915 - +3.0 165,915 - -0.3 165,919 + -0.6 165,973 + -1.5 165,979 + -0.8 165,980 - +1.0 165,980 - -0.1 166,031 - +0.8 166,478 - BPHYT_RS20520 0.52 +0.9 166,821 + -0.1 166,822 - -1.4 166,833 + -0.3 166,834 - -1.1 166,920 + -3.4 166,924 + -1.0 166,925 - -0.6 166,927 - -0.1 166,992 + -2.6 166,992 + -0.4 166,992 + -0.5 166,992 + -1.0 166,992 + -0.3 166,993 - -0.2 166,993 - -1.2 167,194 - BPHYT_RS20525 0.13 -0.1 167,194 - BPHYT_RS20525 0.13 +1.9 167,266 + BPHYT_RS20525 0.18 -1.7 167,343 - BPHYT_RS20525 0.23 -1.3 167,386 + BPHYT_RS20525 0.25 +0.1 167,450 + BPHYT_RS20525 0.29 +0.9 167,450 + BPHYT_RS20525 0.29 -0.4 167,451 - BPHYT_RS20525 0.29 -0.4 167,466 - BPHYT_RS20525 0.30 -1.6 167,466 - BPHYT_RS20525 0.30 +0.6 167,486 + BPHYT_RS20525 0.32 -0.6 167,486 + BPHYT_RS20525 0.32 -0.3 167,741 + BPHYT_RS20525 0.48 +0.0 167,848 + BPHYT_RS20525 0.54 +0.2 167,849 - BPHYT_RS20525 0.54 +0.0 167,852 + BPHYT_RS20525 0.55 -1.3 167,873 + BPHYT_RS20525 0.56 -0.5 167,874 - BPHYT_RS20525 0.56 -0.4
Or see this region's nucleotide sequence