Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19970 and BPHYT_RS19975 are separated by 280 nucleotides BPHYT_RS19975 and BPHYT_RS19980 are separated by 29 nucleotides BPHYT_RS19980 and BPHYT_RS19985 are separated by 2 nucleotides
BPHYT_RS19970: BPHYT_RS19970 - tellurite resistance protein TehA, at 23,615 to 24,631
_RS19970
BPHYT_RS19975: BPHYT_RS19975 - IclR family transcriptional regulator, at 24,912 to 25,676
_RS19975
BPHYT_RS19980: BPHYT_RS19980 - citrate synthase, at 25,706 to 26,530
_RS19980
BPHYT_RS19985: BPHYT_RS19985 - CoA-transferase, at 26,533 to 27,732
_RS19985
Position (kb) 24
25
26 Strain fitness (log2 ratio) -1
0
1
2
3 at 23.928 kb on + strand, within BPHYT_RS19970 at 23.991 kb on + strand, within BPHYT_RS19970 at 23.991 kb on + strand, within BPHYT_RS19970 at 24.211 kb on - strand, within BPHYT_RS19970 at 24.211 kb on - strand, within BPHYT_RS19970 at 24.270 kb on + strand, within BPHYT_RS19970 at 24.271 kb on - strand, within BPHYT_RS19970 at 24.336 kb on + strand, within BPHYT_RS19970 at 24.373 kb on + strand, within BPHYT_RS19970 at 24.374 kb on - strand, within BPHYT_RS19970 at 24.414 kb on - strand, within BPHYT_RS19970 at 24.692 kb on + strand at 24.895 kb on - strand at 24.902 kb on - strand at 25.011 kb on + strand, within BPHYT_RS19975 at 25.012 kb on - strand, within BPHYT_RS19975 at 25.053 kb on + strand, within BPHYT_RS19975 at 25.129 kb on - strand, within BPHYT_RS19975 at 25.251 kb on + strand, within BPHYT_RS19975 at 25.405 kb on - strand, within BPHYT_RS19975 at 25.428 kb on + strand, within BPHYT_RS19975 at 25.428 kb on + strand, within BPHYT_RS19975 at 25.429 kb on - strand, within BPHYT_RS19975 at 25.674 kb on + strand at 25.737 kb on + strand at 26.172 kb on + strand, within BPHYT_RS19980 at 26.172 kb on + strand, within BPHYT_RS19980 at 26.173 kb on - strand, within BPHYT_RS19980
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 23,928 + BPHYT_RS19970 0.31 +0.6 23,991 + BPHYT_RS19970 0.37 -0.6 23,991 + BPHYT_RS19970 0.37 -0.3 24,211 - BPHYT_RS19970 0.59 -0.6 24,211 - BPHYT_RS19970 0.59 +0.1 24,270 + BPHYT_RS19970 0.64 -0.6 24,271 - BPHYT_RS19970 0.65 +0.8 24,336 + BPHYT_RS19970 0.71 +0.7 24,373 + BPHYT_RS19970 0.75 -0.8 24,374 - BPHYT_RS19970 0.75 +0.4 24,414 - BPHYT_RS19970 0.79 +0.3 24,692 + -0.2 24,895 - +0.4 24,902 - +0.1 25,011 + BPHYT_RS19975 0.13 +0.8 25,012 - BPHYT_RS19975 0.13 +0.6 25,053 + BPHYT_RS19975 0.18 +0.6 25,129 - BPHYT_RS19975 0.28 +0.3 25,251 + BPHYT_RS19975 0.44 +1.7 25,405 - BPHYT_RS19975 0.64 -0.3 25,428 + BPHYT_RS19975 0.67 +1.2 25,428 + BPHYT_RS19975 0.67 +0.2 25,429 - BPHYT_RS19975 0.68 +1.8 25,674 + +3.6 25,737 + +2.0 26,172 + BPHYT_RS19980 0.56 +0.2 26,172 + BPHYT_RS19980 0.56 -0.4 26,173 - BPHYT_RS19980 0.57 -0.4
Or see this region's nucleotide sequence