Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19915

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19910 and BPHYT_RS19915 overlap by 23 nucleotidesBPHYT_RS19915 and BPHYT_RS19920 are separated by 37 nucleotidesBPHYT_RS19920 and BPHYT_RS19925 are separated by 66 nucleotides BPHYT_RS19910: BPHYT_RS19910 - hypothetical protein, at 9,760 to 12,342 _RS19910 BPHYT_RS19915: BPHYT_RS19915 - hemolysin D, at 12,320 to 13,693 _RS19915 BPHYT_RS19920: BPHYT_RS19920 - peptidyl-prolyl cis-trans isomerase, at 13,731 to 14,483 _RS19920 BPHYT_RS19925: BPHYT_RS19925 - peptidase C39, at 14,550 to 17,606 _RS19925 Position (kb) 12 13 14Strain fitness (log2 ratio) -2 -1 0 1 2at 11.560 kb on + strand, within BPHYT_RS19910at 11.769 kb on - strand, within BPHYT_RS19910at 11.881 kb on + strand, within BPHYT_RS19910at 11.906 kb on - strand, within BPHYT_RS19910at 12.161 kb on - strandat 12.545 kb on + strand, within BPHYT_RS19915at 12.579 kb on - strand, within BPHYT_RS19915at 12.579 kb on - strand, within BPHYT_RS19915at 13.246 kb on + strand, within BPHYT_RS19915at 14.022 kb on + strand, within BPHYT_RS19920at 14.667 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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11,560 + BPHYT_RS19910 0.70 -0.2
11,769 - BPHYT_RS19910 0.78 -0.8
11,881 + BPHYT_RS19910 0.82 -1.8
11,906 - BPHYT_RS19910 0.83 -0.3
12,161 - -1.4
12,545 + BPHYT_RS19915 0.16 +0.6
12,579 - BPHYT_RS19915 0.19 -0.3
12,579 - BPHYT_RS19915 0.19 +1.0
13,246 + BPHYT_RS19915 0.67 +2.0
14,022 + BPHYT_RS19920 0.39 -0.4
14,667 + +0.9

Or see this region's nucleotide sequence