Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19650

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,420,418	+		BPHYT_RS19640	0.78	-2.2
4,420,418	+		BPHYT_RS19640	0.78	+0.6
4,420,419	-		BPHYT_RS19640	0.78	-0.0
4,420,419	-		BPHYT_RS19640	0.78	-3.7
4,420,591	-				+1.3
4,421,271	+				-1.1
4,421,271	+				-0.4
4,421,272	-				+0.1
4,421,272	-				-2.0
4,421,624	+		BPHYT_RS19650	0.46	-0.3
4,421,624	+		BPHYT_RS19650	0.46	+0.6
4,421,821	-		BPHYT_RS19650	0.71	-0.6
4,421,830	+		BPHYT_RS19650	0.72	-0.0
4,421,830	+		BPHYT_RS19650	0.72	-0.8
4,421,831	-		BPHYT_RS19650	0.73	-1.0
4,421,831	-		BPHYT_RS19650	0.73	+0.7
4,422,063	-				-1.2
4,422,111	-				-0.5
4,422,132	+				+0.9
4,422,133	-				-1.1
4,422,133	-				-0.2
4,422,192	+				-0.6
4,422,196	-				+0.4
4,422,260	-				-0.1
4,422,520	+		BPHYT_RS19655	0.17	-0.4
4,422,659	-		BPHYT_RS19655	0.26	+0.3
4,423,017	+		BPHYT_RS19655	0.48	-0.4
4,423,017	+		BPHYT_RS19655	0.48	-0.2
4,423,017	+		BPHYT_RS19655	0.48	-0.4
4,423,018	-		BPHYT_RS19655	0.48	-0.3