Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19630

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,415,833	+				-2.8
4,415,833	+				+1.9
4,415,834	-				-1.6
4,416,209	-		BPHYT_RS19620	0.58	-0.7
4,416,309	+		BPHYT_RS19620	0.78	-0.2
4,416,310	-		BPHYT_RS19620	0.78	-0.2
4,416,310	-		BPHYT_RS19620	0.78	-0.3
4,416,611	+		BPHYT_RS19625	0.47	-0.1
4,416,611	+		BPHYT_RS19625	0.47	-0.3
4,416,612	-		BPHYT_RS19625	0.47	-0.3
4,417,156	+		BPHYT_RS19630	0.50	-0.6
4,417,290	+		BPHYT_RS19630	0.70	-0.4
4,417,291	-		BPHYT_RS19630	0.70	-0.2
4,417,306	+		BPHYT_RS19630	0.72	+0.1
4,417,306	+		BPHYT_RS19630	0.72	-0.5
4,417,375	-		BPHYT_RS19630	0.82	-0.9
4,417,498	+				+0.4
4,417,499	-				-0.8
4,417,583	-				+1.0
4,417,583	-				-0.1
4,417,583	-				+0.9
4,417,583	-				-0.7
4,417,614	-				-2.4
4,417,639	+				+0.0
4,417,639	+				-0.8
4,417,667	-				+0.4
4,417,671	+				-0.3
4,417,671	+				+0.3
4,417,671	+				-0.3
4,417,672	-				+0.2
4,417,838	+				+1.4
4,417,838	+				+0.2
4,417,838	+				-1.7
4,417,943	-				+0.1
4,417,979	-				-4.0
4,417,979	-				+0.5
4,417,979	-				-0.2
4,417,979	-				+1.8
4,418,077	-				-0.4
4,418,077	-				-0.1
4,418,096	-				-0.4
4,418,121	+		BPHYT_RS19635	0.11	+2.4
4,418,149	+		BPHYT_RS19635	0.13	-0.5
4,418,152	+		BPHYT_RS19635	0.13	-1.8
4,418,152	+		BPHYT_RS19635	0.13	+1.0
4,418,152	+		BPHYT_RS19635	0.13	+0.3
4,418,233	-		BPHYT_RS19635	0.20	-0.8
4,418,233	-		BPHYT_RS19635	0.20	-0.4
4,418,233	-		BPHYT_RS19635	0.20	+0.2
4,418,244	+		BPHYT_RS19635	0.20	-1.2
4,418,244	+		BPHYT_RS19635	0.20	-0.1
4,418,244	+		BPHYT_RS19635	0.20	-0.5
4,418,247	+		BPHYT_RS19635	0.21	-0.8
4,418,247	+		BPHYT_RS19635	0.21	-0.3
4,418,247	+		BPHYT_RS19635	0.21	+0.9
4,418,247	+		BPHYT_RS19635	0.21	-2.6
4,418,248	-		BPHYT_RS19635	0.21	-0.8
4,418,248	-		BPHYT_RS19635	0.21	+0.1
4,418,248	-		BPHYT_RS19635	0.21	-0.8
4,418,250	+		BPHYT_RS19635	0.21	-0.2
4,418,251	-		BPHYT_RS19635	0.21	+2.3
4,418,423	+		BPHYT_RS19635	0.34	-0.6
4,418,423	+		BPHYT_RS19635	0.34	-0.2
4,418,437	-		BPHYT_RS19635	0.35	-1.5
4,418,497	-		BPHYT_RS19635	0.40	-1.9
4,418,497	-		BPHYT_RS19635	0.40	-0.5