Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19520 and BPHYT_RS19525 are separated by 94 nucleotides BPHYT_RS19525 and BPHYT_RS19530 are separated by 105 nucleotides BPHYT_RS19530 and BPHYT_RS19535 are separated by 239 nucleotides BPHYT_RS19535 and BPHYT_RS19540 are separated by 134 nucleotides
BPHYT_RS19520: BPHYT_RS19520 - phenylalanine 4-monooxygenase, at 4,392,660 to 4,393,550
_RS19520
BPHYT_RS19525: BPHYT_RS19525 - pterin-4-alpha-carbinolamine dehydratase, at 4,393,645 to 4,393,935
_RS19525
BPHYT_RS19530: BPHYT_RS19530 - hypothetical protein, at 4,394,041 to 4,394,265
_RS19530
BPHYT_RS19535: BPHYT_RS19535 - XRE family transcriptional regulator, at 4,394,505 to 4,395,191
_RS19535
BPHYT_RS19540: BPHYT_RS19540 - sensor histidine kinase, at 4,395,326 to 4,396,831
_RS19540
Position (kb) 4394
4395
4396 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4393.545 kb on - strand at 4393.837 kb on + strand, within BPHYT_RS19525 at 4393.924 kb on - strand at 4393.924 kb on - strand at 4393.934 kb on - strand at 4393.947 kb on + strand at 4393.948 kb on - strand at 4393.948 kb on - strand at 4394.017 kb on - strand at 4394.049 kb on + strand at 4394.050 kb on - strand at 4394.066 kb on + strand, within BPHYT_RS19530 at 4394.066 kb on + strand, within BPHYT_RS19530 at 4394.067 kb on - strand, within BPHYT_RS19530 at 4394.067 kb on - strand, within BPHYT_RS19530 at 4394.131 kb on + strand, within BPHYT_RS19530 at 4394.132 kb on - strand, within BPHYT_RS19530 at 4394.148 kb on - strand, within BPHYT_RS19530 at 4394.479 kb on + strand at 4394.489 kb on + strand at 4394.796 kb on + strand, within BPHYT_RS19535 at 4394.797 kb on - strand, within BPHYT_RS19535 at 4394.797 kb on - strand, within BPHYT_RS19535 at 4395.090 kb on + strand, within BPHYT_RS19535 at 4395.090 kb on + strand, within BPHYT_RS19535 at 4395.091 kb on - strand, within BPHYT_RS19535 at 4395.107 kb on + strand, within BPHYT_RS19535 at 4395.190 kb on - strand at 4395.347 kb on - strand at 4395.422 kb on + strand at 4395.423 kb on - strand at 4395.440 kb on + strand at 4395.441 kb on - strand at 4395.501 kb on + strand, within BPHYT_RS19540 at 4395.502 kb on - strand, within BPHYT_RS19540 at 4395.584 kb on + strand, within BPHYT_RS19540 at 4395.585 kb on - strand, within BPHYT_RS19540 at 4395.671 kb on + strand, within BPHYT_RS19540 at 4395.671 kb on + strand, within BPHYT_RS19540 at 4395.672 kb on - strand, within BPHYT_RS19540 at 4395.672 kb on - strand, within BPHYT_RS19540 at 4395.959 kb on + strand, within BPHYT_RS19540 at 4395.959 kb on + strand, within BPHYT_RS19540 at 4395.959 kb on + strand, within BPHYT_RS19540 at 4395.960 kb on - strand, within BPHYT_RS19540 at 4395.960 kb on - strand, within BPHYT_RS19540 at 4395.960 kb on - strand, within BPHYT_RS19540 at 4395.960 kb on - strand, within BPHYT_RS19540 at 4395.960 kb on - strand, within BPHYT_RS19540 at 4395.964 kb on - strand, within BPHYT_RS19540
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 4,393,545 - -0.7 4,393,837 + BPHYT_RS19525 0.66 +1.3 4,393,924 - +0.5 4,393,924 - -0.2 4,393,934 - -0.1 4,393,947 + +0.1 4,393,948 - +0.8 4,393,948 - +0.2 4,394,017 - -0.1 4,394,049 + -1.1 4,394,050 - -0.6 4,394,066 + BPHYT_RS19530 0.11 -0.3 4,394,066 + BPHYT_RS19530 0.11 +3.1 4,394,067 - BPHYT_RS19530 0.12 +0.3 4,394,067 - BPHYT_RS19530 0.12 +0.4 4,394,131 + BPHYT_RS19530 0.40 -0.8 4,394,132 - BPHYT_RS19530 0.40 -0.4 4,394,148 - BPHYT_RS19530 0.48 -0.8 4,394,479 + +0.1 4,394,489 + +0.8 4,394,796 + BPHYT_RS19535 0.42 -0.7 4,394,797 - BPHYT_RS19535 0.43 -1.6 4,394,797 - BPHYT_RS19535 0.43 -1.3 4,395,090 + BPHYT_RS19535 0.85 -0.7 4,395,090 + BPHYT_RS19535 0.85 -0.9 4,395,091 - BPHYT_RS19535 0.85 -0.4 4,395,107 + BPHYT_RS19535 0.88 -1.5 4,395,190 - +0.2 4,395,347 - -0.3 4,395,422 + -1.1 4,395,423 - +0.8 4,395,440 + -0.7 4,395,441 - -1.8 4,395,501 + BPHYT_RS19540 0.12 +1.0 4,395,502 - BPHYT_RS19540 0.12 -0.3 4,395,584 + BPHYT_RS19540 0.17 -0.0 4,395,585 - BPHYT_RS19540 0.17 -0.2 4,395,671 + BPHYT_RS19540 0.23 -0.4 4,395,671 + BPHYT_RS19540 0.23 -0.0 4,395,672 - BPHYT_RS19540 0.23 -1.0 4,395,672 - BPHYT_RS19540 0.23 -0.0 4,395,959 + BPHYT_RS19540 0.42 -3.3 4,395,959 + BPHYT_RS19540 0.42 +0.1 4,395,959 + BPHYT_RS19540 0.42 -0.1 4,395,960 - BPHYT_RS19540 0.42 +0.1 4,395,960 - BPHYT_RS19540 0.42 -0.1 4,395,960 - BPHYT_RS19540 0.42 -0.4 4,395,960 - BPHYT_RS19540 0.42 -0.6 4,395,960 - BPHYT_RS19540 0.42 -0.3 4,395,964 - BPHYT_RS19540 0.42 -0.2
Or see this region's nucleotide sequence