Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19370

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,357,446	+				-0.0
4,357,447	-				-1.2
4,357,447	-				-0.9
4,357,478	+				-0.4
4,357,479	-				-0.3
4,357,479	-				+0.3
4,357,479	-				-1.4
4,357,545	-				-0.1
4,357,571	+				+1.0
4,357,576	-				-1.5
4,357,576	-				-1.6
4,357,576	-				-0.4
4,357,749	+		BPHYT_RS19370	0.20	-0.3
4,357,749	+		BPHYT_RS19370	0.20	+0.5
4,357,749	+		BPHYT_RS19370	0.20	-0.8
4,357,749	+		BPHYT_RS19370	0.20	+0.1
4,357,750	-		BPHYT_RS19370	0.20	+0.4
4,357,759	-		BPHYT_RS19370	0.21	+0.2
4,357,768	-		BPHYT_RS19370	0.22	+0.2
4,357,768	-		BPHYT_RS19370	0.22	-0.7
4,357,848	+		BPHYT_RS19370	0.32	+0.1
4,357,849	-		BPHYT_RS19370	0.32	+0.5
4,357,965	+		BPHYT_RS19370	0.47	+0.4
4,357,965	+		BPHYT_RS19370	0.47	-0.0
4,357,965	+		BPHYT_RS19370	0.47	-1.6
4,357,965	+		BPHYT_RS19370	0.47	+0.6
4,357,965	+		BPHYT_RS19370	0.47	+0.6
4,357,979	+		BPHYT_RS19370	0.48	-1.8
4,357,979	+		BPHYT_RS19370	0.48	-0.6
4,358,016	+		BPHYT_RS19370	0.53	-0.2
4,358,016	+		BPHYT_RS19370	0.53	+0.4
4,358,100	+		BPHYT_RS19370	0.64	-0.4
4,358,100	+		BPHYT_RS19370	0.64	-0.5
4,358,100	+		BPHYT_RS19370	0.64	+1.3
4,358,265	+		BPHYT_RS19370	0.84	+0.0
4,358,316	+				+0.7
4,358,316	+				-0.6
4,358,316	+				-0.7
4,358,317	-				-0.2
4,358,358	+				+0.2
4,358,359	-				-0.2
4,358,388	+				+0.3
4,358,393	+				-0.3
4,358,393	+				+0.0
4,358,394	-				-0.4
4,358,394	-				-0.7
4,358,487	+				+0.0
4,358,487	+				-0.6
4,358,487	+				-1.3
4,358,487	+				-0.1
4,358,493	+				-0.9
4,358,493	+				-0.6
4,358,493	+				-1.5
4,358,493	+				-2.2
4,358,507	-				+0.2
4,358,524	+				+2.3
4,358,524	+				+2.4
4,358,525	-				+0.0
4,358,525	-				+0.3
4,358,525	-				+0.4
4,358,525	-				-0.1
4,358,575	+				-0.5
4,358,651	-				+0.8
4,358,710	+				+1.1
4,358,711	-				+0.7
4,358,728	+				+0.0
4,358,729	-				+0.3
4,358,818	+				+0.2
4,358,818	+				-1.8
4,358,834	-				-0.2
4,359,150	+				-0.6
4,359,150	+				-0.5
4,359,159	+				+0.0
4,359,212	+				+0.6
4,359,212	+				+1.3