Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19325

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,338,528	+		BPHYT_RS19320	0.20	-0.4
4,338,565	+		BPHYT_RS19320	0.23	+1.7
4,338,565	+		BPHYT_RS19320	0.23	+0.6
4,338,566	-		BPHYT_RS19320	0.23	+0.6
4,338,566	-		BPHYT_RS19320	0.23	-0.7
4,338,617	-		BPHYT_RS19320	0.28	+0.7
4,338,619	+		BPHYT_RS19320	0.28	-0.2
4,338,620	-		BPHYT_RS19320	0.28	-0.1
4,338,670	-		BPHYT_RS19320	0.32	-1.9
4,338,758	+		BPHYT_RS19320	0.40	+0.8
4,338,759	-		BPHYT_RS19320	0.40	-0.0
4,338,850	-		BPHYT_RS19320	0.49	+0.1
4,338,895	+		BPHYT_RS19320	0.53	+0.0
4,339,445	+				-0.9
4,339,457	+				+0.0
4,339,457	+				+0.4
4,339,477	+				-1.0
4,339,478	-				-0.4
4,339,513	+				-1.2
4,339,693	-		BPHYT_RS19325	0.54	-2.3
4,339,696	+		BPHYT_RS19325	0.54	-1.5
4,339,696	+		BPHYT_RS19325	0.54	-1.3
4,339,696	+		BPHYT_RS19325	0.54	-0.5
4,339,846	+				-0.2
4,339,846	+				-1.4
4,339,846	+				-0.3
4,339,878	+				+0.8
4,339,878	+				-0.8
4,339,879	-				-2.7
4,339,885	-				+0.6
4,340,261	-		BPHYT_RS19330	0.11	-0.0
4,340,338	+		BPHYT_RS19330	0.13	-0.2
4,340,796	+		BPHYT_RS19330	0.29	-0.1