Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18790

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,223,581	-		BPHYT_RS18780	0.69	+0.5
4,223,884	+				-0.4
4,223,884	+				+0.3
4,223,884	+				+0.2
4,223,884	+				-0.3
4,223,884	+				-0.3
4,223,885	-				-0.2
4,223,885	-				+0.3
4,223,885	-				+0.6
4,223,885	-				+3.3
4,223,885	-				+0.4
4,223,885	-				-0.8
4,223,885	-				+0.7
4,223,885	-				-0.7
4,223,885	-				+1.3
4,223,885	-				-0.0
4,223,885	-				+0.6
4,224,398	+		BPHYT_RS18785	0.76	+0.1
4,225,586	-		BPHYT_RS18790	0.62	-0.5
4,225,807	+		BPHYT_RS18790	0.76	+0.2
4,225,808	-		BPHYT_RS18790	0.76	+0.5
4,225,808	-		BPHYT_RS18790	0.76	+0.2
4,225,808	-		BPHYT_RS18790	0.76	+0.2
4,225,809	+		BPHYT_RS18790	0.76	-1.2
4,225,809	+		BPHYT_RS18790	0.76	+0.4
4,225,810	-		BPHYT_RS18790	0.76	+0.1
4,225,810	-		BPHYT_RS18790	0.76	-0.5
4,225,918	+		BPHYT_RS18790	0.83	+0.4
4,225,998	+		BPHYT_RS18790	0.87	+0.1
4,225,998	+		BPHYT_RS18790	0.87	+0.7
4,225,999	-		BPHYT_RS18790	0.87	+0.7
4,225,999	-		BPHYT_RS18790	0.87	-0.4
4,226,352	+		BPHYT_RS18795	0.32	+0.5
4,226,353	-		BPHYT_RS18795	0.32	+0.9
4,226,539	-		BPHYT_RS18795	0.74	+0.2
4,226,727	+				-0.1
4,226,728	-				+0.7
4,227,105	+		BPHYT_RS18800	0.25	-0.4
4,227,106	-		BPHYT_RS18800	0.25	+0.5