Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18755 and BPHYT_RS18760 are separated by 91 nucleotides BPHYT_RS18760 and BPHYT_RS18765 overlap by 4 nucleotides BPHYT_RS18765 and BPHYT_RS18770 are separated by 216 nucleotides
BPHYT_RS18755: BPHYT_RS18755 - flagellar hook-length control protein FliK, at 4,218,026 to 4,219,459
_RS18755
BPHYT_RS18760: BPHYT_RS18760 - flagellar biosynthesis protein FliT, at 4,219,551 to 4,219,877
_RS18760
BPHYT_RS18765: BPHYT_RS18765 - flagellar biosynthesis protein FliS, at 4,219,874 to 4,220,308
_RS18765
BPHYT_RS18770: BPHYT_RS18770 - flagellar hook-basal body protein FliE, at 4,220,525 to 4,220,860
_RS18770
Position (kb) 4219
4220 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4219.397 kb on - strand at 4219.498 kb on + strand at 4219.498 kb on + strand at 4219.499 kb on - strand at 4219.499 kb on - strand at 4219.520 kb on + strand at 4219.520 kb on + strand at 4219.520 kb on + strand at 4219.685 kb on - strand, within BPHYT_RS18760 at 4219.685 kb on - strand, within BPHYT_RS18760 at 4219.759 kb on + strand, within BPHYT_RS18760 at 4220.030 kb on - strand, within BPHYT_RS18765 at 4220.030 kb on - strand, within BPHYT_RS18765 at 4220.030 kb on - strand, within BPHYT_RS18765 at 4220.030 kb on - strand, within BPHYT_RS18765 at 4220.030 kb on - strand, within BPHYT_RS18765 at 4220.032 kb on - strand, within BPHYT_RS18765 at 4220.032 kb on - strand, within BPHYT_RS18765 at 4220.032 kb on - strand, within BPHYT_RS18765 at 4220.036 kb on - strand, within BPHYT_RS18765 at 4220.036 kb on - strand, within BPHYT_RS18765 at 4220.038 kb on - strand, within BPHYT_RS18765 at 4220.038 kb on - strand, within BPHYT_RS18765 at 4220.275 kb on - strand at 4220.275 kb on - strand at 4220.388 kb on - strand at 4220.388 kb on - strand at 4220.388 kb on - strand at 4220.388 kb on - strand at 4220.420 kb on + strand at 4220.421 kb on - strand at 4220.440 kb on + strand at 4220.441 kb on - strand at 4220.553 kb on + strand at 4220.554 kb on - strand at 4220.779 kb on + strand, within BPHYT_RS18770
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 4,219,397 - -2.7 4,219,498 + +1.2 4,219,498 + -1.0 4,219,499 - -0.4 4,219,499 - -0.4 4,219,520 + -0.9 4,219,520 + -1.8 4,219,520 + +0.2 4,219,685 - BPHYT_RS18760 0.41 -2.8 4,219,685 - BPHYT_RS18760 0.41 -2.4 4,219,759 + BPHYT_RS18760 0.64 -0.2 4,220,030 - BPHYT_RS18765 0.36 -0.9 4,220,030 - BPHYT_RS18765 0.36 -0.9 4,220,030 - BPHYT_RS18765 0.36 -0.0 4,220,030 - BPHYT_RS18765 0.36 +1.2 4,220,030 - BPHYT_RS18765 0.36 +0.6 4,220,032 - BPHYT_RS18765 0.36 +0.1 4,220,032 - BPHYT_RS18765 0.36 -3.3 4,220,032 - BPHYT_RS18765 0.36 -0.3 4,220,036 - BPHYT_RS18765 0.37 -1.3 4,220,036 - BPHYT_RS18765 0.37 +1.0 4,220,038 - BPHYT_RS18765 0.38 -0.3 4,220,038 - BPHYT_RS18765 0.38 +0.6 4,220,275 - -0.8 4,220,275 - -0.2 4,220,388 - -0.5 4,220,388 - +0.4 4,220,388 - -0.0 4,220,388 - +0.3 4,220,420 + -0.7 4,220,421 - -0.8 4,220,440 + +0.6 4,220,441 - -0.2 4,220,553 + +0.3 4,220,554 - -0.6 4,220,779 + BPHYT_RS18770 0.76 +0.8
Or see this region's nucleotide sequence