Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18570 and BPHYT_RS18575 are separated by 3 nucleotides BPHYT_RS18575 and BPHYT_RS18580 are separated by 90 nucleotides BPHYT_RS18580 and BPHYT_RS18585 are separated by 13 nucleotides
BPHYT_RS18570: BPHYT_RS18570 - tRNA 2-thiocytidine biosynthesis protein TtcA, at 4,178,299 to 4,179,309
_RS18570
BPHYT_RS18575: BPHYT_RS18575 - diguanylate cyclase, at 4,179,313 to 4,179,708
_RS18575
BPHYT_RS18580: BPHYT_RS18580 - short-chain dehydrogenase, at 4,179,799 to 4,180,617
_RS18580
BPHYT_RS18585: BPHYT_RS18585 - hypothetical protein, at 4,180,631 to 4,181,821
_RS18585
Position (kb) 4179
4180
4181 Strain fitness (log2 ratio) -2
-1
0
1 at 4178.904 kb on - strand, within BPHYT_RS18570 at 4178.904 kb on - strand, within BPHYT_RS18570 at 4179.068 kb on + strand, within BPHYT_RS18570 at 4179.068 kb on + strand, within BPHYT_RS18570 at 4179.069 kb on - strand, within BPHYT_RS18570 at 4179.069 kb on - strand, within BPHYT_RS18570 at 4179.188 kb on + strand, within BPHYT_RS18570 at 4179.189 kb on - strand, within BPHYT_RS18570 at 4179.189 kb on - strand, within BPHYT_RS18570 at 4179.922 kb on - strand, within BPHYT_RS18580 at 4179.955 kb on - strand, within BPHYT_RS18580 at 4179.955 kb on - strand, within BPHYT_RS18580 at 4179.958 kb on - strand, within BPHYT_RS18580 at 4179.958 kb on - strand, within BPHYT_RS18580 at 4180.104 kb on - strand, within BPHYT_RS18580 at 4180.112 kb on + strand, within BPHYT_RS18580 at 4180.130 kb on + strand, within BPHYT_RS18580 at 4180.131 kb on - strand, within BPHYT_RS18580 at 4180.131 kb on - strand, within BPHYT_RS18580 at 4180.275 kb on - strand, within BPHYT_RS18580 at 4180.479 kb on - strand, within BPHYT_RS18580 at 4180.620 kb on - strand at 4180.663 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 4,178,904 - BPHYT_RS18570 0.60 +0.0 4,178,904 - BPHYT_RS18570 0.60 -0.4 4,179,068 + BPHYT_RS18570 0.76 +0.6 4,179,068 + BPHYT_RS18570 0.76 +0.1 4,179,069 - BPHYT_RS18570 0.76 -0.3 4,179,069 - BPHYT_RS18570 0.76 +0.2 4,179,188 + BPHYT_RS18570 0.88 +0.6 4,179,189 - BPHYT_RS18570 0.88 +0.3 4,179,189 - BPHYT_RS18570 0.88 -0.0 4,179,922 - BPHYT_RS18580 0.15 -2.2 4,179,955 - BPHYT_RS18580 0.19 +0.7 4,179,955 - BPHYT_RS18580 0.19 +0.1 4,179,958 - BPHYT_RS18580 0.19 +0.3 4,179,958 - BPHYT_RS18580 0.19 +0.0 4,180,104 - BPHYT_RS18580 0.37 -1.3 4,180,112 + BPHYT_RS18580 0.38 +0.8 4,180,130 + BPHYT_RS18580 0.40 -2.3 4,180,131 - BPHYT_RS18580 0.41 +0.1 4,180,131 - BPHYT_RS18580 0.41 +0.3 4,180,275 - BPHYT_RS18580 0.58 -0.7 4,180,479 - BPHYT_RS18580 0.83 -0.5 4,180,620 - +0.4 4,180,663 - -2.1
Or see this region's nucleotide sequence