Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18580
Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X |
---|---|---|---|---|---|
remove | |||||
4,178,904 | - | BPHYT_RS18570 | 0.60 | +0.0 | |
4,178,904 | - | BPHYT_RS18570 | 0.60 | -0.4 | |
4,179,068 | + | BPHYT_RS18570 | 0.76 | +0.6 | |
4,179,068 | + | BPHYT_RS18570 | 0.76 | +0.1 | |
4,179,069 | - | BPHYT_RS18570 | 0.76 | -0.3 | |
4,179,069 | - | BPHYT_RS18570 | 0.76 | +0.2 | |
4,179,188 | + | BPHYT_RS18570 | 0.88 | +0.6 | |
4,179,189 | - | BPHYT_RS18570 | 0.88 | +0.3 | |
4,179,189 | - | BPHYT_RS18570 | 0.88 | -0.0 | |
4,179,922 | - | BPHYT_RS18580 | 0.15 | -2.2 | |
4,179,955 | - | BPHYT_RS18580 | 0.19 | +0.7 | |
4,179,955 | - | BPHYT_RS18580 | 0.19 | +0.1 | |
4,179,958 | - | BPHYT_RS18580 | 0.19 | +0.3 | |
4,179,958 | - | BPHYT_RS18580 | 0.19 | +0.0 | |
4,180,104 | - | BPHYT_RS18580 | 0.37 | -1.3 | |
4,180,112 | + | BPHYT_RS18580 | 0.38 | +0.8 | |
4,180,130 | + | BPHYT_RS18580 | 0.40 | -2.3 | |
4,180,131 | - | BPHYT_RS18580 | 0.41 | +0.1 | |
4,180,131 | - | BPHYT_RS18580 | 0.41 | +0.3 | |
4,180,275 | - | BPHYT_RS18580 | 0.58 | -0.7 | |
4,180,479 | - | BPHYT_RS18580 | 0.83 | -0.5 | |
4,180,620 | - | +0.4 | |||
4,180,663 | - | -2.1 |
Or see this region's nucleotide sequence