Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18535

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,167,310	-				-2.3
4,167,374	+				+0.0
4,167,393	-				+0.0
4,167,418	+				-1.1
4,167,418	+				+4.7
4,167,418	+				+0.5
4,167,435	+				-0.1
4,167,436	-				-2.2
4,167,457	+				+0.2
4,167,457	+				-1.5
4,167,457	+				-0.4
4,167,460	+				+1.3
4,167,460	+				+0.2
4,167,507	+				+0.5
4,167,520	+				+0.1
4,167,520	+				+0.8
4,168,296	+				-0.0
4,168,323	+				+1.0
4,168,348	-				+0.6
4,168,492	+		BPHYT_RS18535	0.15	-1.7
4,168,492	+		BPHYT_RS18535	0.15	+0.2
4,168,493	-		BPHYT_RS18535	0.15	-0.5
4,168,493	-		BPHYT_RS18535	0.15	+1.7
4,168,600	-		BPHYT_RS18535	0.24	-1.2
4,168,600	-		BPHYT_RS18535	0.24	+1.3
4,168,600	-		BPHYT_RS18535	0.24	-1.0
4,168,624	-		BPHYT_RS18535	0.26	+0.0
4,168,624	-		BPHYT_RS18535	0.26	+1.5
4,168,711	+		BPHYT_RS18535	0.33	+0.4
4,168,712	-		BPHYT_RS18535	0.33	+0.4
4,168,712	-		BPHYT_RS18535	0.33	-0.2
4,168,713	+		BPHYT_RS18535	0.33	+0.1
4,168,714	-		BPHYT_RS18535	0.33	+0.5
4,168,714	-		BPHYT_RS18535	0.33	-0.2
4,168,714	-		BPHYT_RS18535	0.33	+0.5
4,168,714	-		BPHYT_RS18535	0.33	-0.3
4,168,740	+		BPHYT_RS18535	0.35	+0.4
4,168,741	-		BPHYT_RS18535	0.35	+0.0
4,168,741	-		BPHYT_RS18535	0.35	+1.0
4,168,893	+		BPHYT_RS18535	0.47	+0.3
4,168,893	+		BPHYT_RS18535	0.47	+0.8
4,168,893	+		BPHYT_RS18535	0.47	+0.4
4,168,893	+		BPHYT_RS18535	0.47	+0.3
4,168,893	+		BPHYT_RS18535	0.47	+0.5
4,169,021	+		BPHYT_RS18535	0.57	+0.7
4,169,021	+		BPHYT_RS18535	0.57	+0.6
4,169,021	+		BPHYT_RS18535	0.57	+0.7
4,169,046	+		BPHYT_RS18535	0.59	+0.8
4,169,046	+		BPHYT_RS18535	0.59	+0.1
4,169,047	-		BPHYT_RS18535	0.59	+1.0
4,169,052	+		BPHYT_RS18535	0.59	+0.3
4,169,053	-		BPHYT_RS18535	0.59	+0.8
4,169,163	+		BPHYT_RS18535	0.68	+0.5
4,169,220	+		BPHYT_RS18535	0.72	-1.1
4,169,220	+		BPHYT_RS18535	0.72	-1.6
4,169,220	+		BPHYT_RS18535	0.72	+0.5
4,169,221	-		BPHYT_RS18535	0.72	+0.4
4,169,221	-		BPHYT_RS18535	0.72	+0.0
4,169,221	-		BPHYT_RS18535	0.72	+0.1
4,169,464	-				+0.3
4,169,473	+				+0.0
4,169,473	+				+0.5
4,169,475	+				+0.2
4,169,476	-				-0.2
4,169,476	-				+2.7
4,169,480	-				+0.9
4,169,480	-				+1.6
4,169,480	-				+0.3
4,169,480	-				+0.7
4,169,480	-				+0.0
4,169,498	-				+1.5
4,169,550	+				-2.1
4,169,550	+				+0.8
4,169,550	+				+1.6
4,169,550	+				+0.5
4,169,551	-				+1.3
4,169,551	-				+0.2
4,169,576	+				-0.1
4,169,576	+				-0.2
4,169,606	+				-0.1
4,169,606	+				-0.0
4,169,791	+				+0.1
4,169,830	+		BPHYT_RS18540	0.11	-0.3
4,169,830	+		BPHYT_RS18540	0.11	-0.2
4,169,830	+		BPHYT_RS18540	0.11	-0.2
4,169,830	+		BPHYT_RS18540	0.11	-0.2
4,169,964	+		BPHYT_RS18540	0.28	-0.3
4,170,021	+		BPHYT_RS18540	0.36	-0.7
4,170,021	+		BPHYT_RS18540	0.36	-0.2
4,170,309	+		BPHYT_RS18540	0.73	+0.0
4,170,390	+		BPHYT_RS18540	0.83	-1.0
4,170,391	-		BPHYT_RS18540	0.83	-0.1