Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18425

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,141,257	-				-0.4
4,141,311	+				+2.4
4,141,311	+				+0.5
4,141,311	+				+0.4
4,141,448	+		BPHYT_RS18415	0.52	+0.6
4,141,536	+		BPHYT_RS18415	0.86	+0.5
4,141,536	+		BPHYT_RS18415	0.86	+0.9
4,142,061	+		BPHYT_RS18420	0.67	+0.8
4,142,062	-		BPHYT_RS18420	0.67	+0.4
4,142,164	-		BPHYT_RS18420	0.85	-0.2
4,142,238	-				-0.2
4,142,254	-				-0.1
4,142,275	+				-0.3
4,142,276	-				+0.4
4,142,305	+		BPHYT_RS18425	0.14	+1.0
4,142,305	+		BPHYT_RS18425	0.14	+0.8
4,142,353	-		BPHYT_RS18425	0.27	-0.5
4,142,486	+		BPHYT_RS18425	0.62	+0.6
4,142,486	+		BPHYT_RS18425	0.62	+1.5
4,142,487	-		BPHYT_RS18425	0.62	+0.5
4,142,487	-		BPHYT_RS18425	0.62	+0.2
4,142,487	-		BPHYT_RS18425	0.62	+0.0
4,142,546	+		BPHYT_RS18425	0.78	+1.3
4,142,547	-		BPHYT_RS18425	0.78	+0.8
4,142,651	+				-1.0
4,142,651	+				-0.7
4,142,726	-				+1.3
4,142,726	-				+0.9
4,142,750	+				-0.6
4,142,750	+				-0.6
4,142,750	+				+0.5
4,142,750	+				-0.5
4,142,751	-				-0.1
4,142,751	-				-0.3
4,142,751	-				-0.3
4,142,751	-				-0.2
4,142,751	-				-1.4
4,142,844	-				+1.5
4,142,943	+		BPHYT_RS18430	0.18	-1.3
4,142,943	+		BPHYT_RS18430	0.18	+1.0
4,142,944	-		BPHYT_RS18430	0.18	+0.4
4,142,982	-		BPHYT_RS18430	0.24	+0.1
4,142,985	+		BPHYT_RS18430	0.25	+0.4
4,143,002	+		BPHYT_RS18430	0.27	+0.0
4,143,003	-		BPHYT_RS18430	0.27	-1.4
4,143,146	-		BPHYT_RS18430	0.49	+0.4
4,143,146	-		BPHYT_RS18430	0.49	+0.4
4,143,332	+		BPHYT_RS18430	0.78	+0.4
4,143,383	-		BPHYT_RS18430	0.86	+0.7
4,143,383	-		BPHYT_RS18430	0.86	+0.5
4,143,409	+		BPHYT_RS18430	0.90	-0.4
4,143,409	+		BPHYT_RS18430	0.90	+0.3
4,143,409	+		BPHYT_RS18430	0.90	+0.2
4,143,410	-				-1.7
4,143,473	-				-1.2
4,143,500	+				+0.3
4,143,501	-				-1.6
4,143,503	-				-1.2
4,143,503	-				-1.3
4,143,622	-				+0.9
4,143,622	-				-1.6