Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18330

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,123,001	+				-0.4
4,123,031	+				+1.2
4,123,031	+				+0.0
4,123,032	-				+0.4
4,123,032	-				+3.4
4,123,032	-				+1.0
4,123,329	+		BPHYT_RS18325	0.43	-2.3
4,123,329	+		BPHYT_RS18325	0.43	+0.4
4,123,329	+		BPHYT_RS18325	0.43	+0.2
4,123,329	+		BPHYT_RS18325	0.43	-0.3
4,123,331	+		BPHYT_RS18325	0.44	-0.6
4,123,331	+		BPHYT_RS18325	0.44	-0.3
4,123,331	+		BPHYT_RS18325	0.44	+1.0
4,123,371	+		BPHYT_RS18325	0.49	+2.4
4,123,372	-		BPHYT_RS18325	0.50	+0.1
4,123,527	-		BPHYT_RS18325	0.72	+0.3
4,123,527	-		BPHYT_RS18325	0.72	+0.6
4,123,527	-		BPHYT_RS18325	0.72	-0.1
4,123,586	-		BPHYT_RS18325	0.81	+0.5
4,123,675	-				-0.8
4,123,738	+				+0.2
4,123,738	+				+0.3
4,123,738	+				+0.7
4,123,739	-				-2.0
4,123,739	-				-1.8
4,123,769	+				-0.1
4,123,769	+				+0.0
4,123,769	+				-0.9
4,123,770	-				+0.0
4,123,770	-				-2.0
4,123,770	-				-0.2
4,123,770	-				+0.3
4,123,770	-				+2.7
4,123,770	-				-1.1
4,123,773	+				+0.8
4,123,773	+				-1.6
4,123,773	+				-0.6
4,123,774	-				+0.1
4,123,774	-				+0.1
4,123,779	+				-0.7
4,123,780	-				-1.3
4,123,780	-				-0.1
4,123,834	+				+1.0
4,123,893	-				+0.4
4,123,893	-				-1.8
4,123,893	-				-0.3
4,123,893	-				-0.4
4,123,893	-				+0.1
4,123,893	-				-0.2
4,123,899	-				-0.4
4,123,937	-				-0.0
4,124,166	+		BPHYT_RS18330	0.30	-0.9
4,124,166	+		BPHYT_RS18330	0.30	-1.0
4,124,166	+		BPHYT_RS18330	0.30	+0.7
4,124,365	+		BPHYT_RS18330	0.63	+0.0
4,124,453	+		BPHYT_RS18330	0.78	-1.0
4,124,453	+		BPHYT_RS18330	0.78	+0.1
4,124,468	+		BPHYT_RS18330	0.80	+1.2
4,124,577	-				-0.3
4,124,585	+				+0.2
4,124,586	-				+0.3
4,124,586	-				-0.1
4,124,657	+				-0.2
4,124,658	-				-0.6
4,124,696	+				+0.5
4,124,697	-				+0.2
4,124,826	-				-0.5
4,124,933	-		BPHYT_RS18335	0.23	+1.2
4,124,987	+		BPHYT_RS18335	0.32	+0.1
4,124,988	-		BPHYT_RS18335	0.32	+0.1
4,124,988	-		BPHYT_RS18335	0.32	-0.0
4,124,988	-		BPHYT_RS18335	0.32	-0.3
4,125,227	+		BPHYT_RS18335	0.74	-0.2
4,125,228	-		BPHYT_RS18335	0.74	+0.2
4,125,228	-		BPHYT_RS18335	0.74	-0.4
4,125,228	-		BPHYT_RS18335	0.74	+0.3
4,125,228	-		BPHYT_RS18335	0.74	+0.3
4,125,228	-		BPHYT_RS18335	0.74	-1.1
4,125,228	-		BPHYT_RS18335	0.74	-0.1
4,125,228	-		BPHYT_RS18335	0.74	+0.5
4,125,228	-		BPHYT_RS18335	0.74	-1.6
4,125,336	+				+0.5