Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17860

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,033,860	+		BPHYT_RS17855	0.86	-2.6
4,033,864	-		BPHYT_RS17855	0.86	-2.5
4,033,900	-		BPHYT_RS17855	0.87	-5.3
4,033,936	-		BPHYT_RS17855	0.87	-4.3
4,033,936	-		BPHYT_RS17855	0.87	-5.5
4,033,952	-		BPHYT_RS17855	0.88	-2.2
4,033,998	+		BPHYT_RS17855	0.89	-3.3
4,033,998	+		BPHYT_RS17855	0.89	-1.3
4,033,998	+		BPHYT_RS17855	0.89	-2.7
4,033,999	-		BPHYT_RS17855	0.89	-3.0
4,033,999	-		BPHYT_RS17855	0.89	-5.3
4,033,999	-		BPHYT_RS17855	0.89	-4.2
4,033,999	-		BPHYT_RS17855	0.89	-5.5
4,034,287	-				-5.3
4,034,287	-				-1.1
4,034,475	+				-2.4
4,034,475	+				-5.5
4,034,476	-				-1.1
4,034,576	-				-2.3
4,034,627	-				-0.4
4,034,627	-				-0.5
4,034,917	-		BPHYT_RS17860	0.13	-0.6
4,035,120	+		BPHYT_RS17860	0.42	-0.0
4,035,121	-		BPHYT_RS17860	0.42	+1.2
4,035,192	+		BPHYT_RS17860	0.52	+0.4
4,035,215	-		BPHYT_RS17860	0.56	-0.2
4,035,280	-		BPHYT_RS17860	0.65	+0.8
4,035,280	-		BPHYT_RS17860	0.65	-3.8
4,035,432	+		BPHYT_RS17860	0.86	-0.2
4,035,507	+				+0.6
4,035,507	+				+0.1
4,035,507	+				-1.3
4,035,507	+				+1.5
4,035,507	+				-0.7
4,035,507	+				+0.6
4,035,507	+				-0.3
4,035,507	+				-0.5
4,035,507	+				-0.0
4,035,556	+				-0.2
4,035,557	-				-1.3
4,035,557	-				-0.6
4,035,557	-				+0.3
4,035,557	-				+0.3
4,035,660	-				-0.5
4,035,680	+				+0.5
4,035,680	+				+1.6
4,035,687	-				+0.1
4,035,716	+				+0.5
4,035,801	+		BPHYT_RS17865	0.12	+0.6
4,035,801	+		BPHYT_RS17865	0.12	-0.3
4,035,827	-		BPHYT_RS17865	0.15	-0.8
4,036,089	+		BPHYT_RS17865	0.51	+0.9
4,036,093	-		BPHYT_RS17865	0.52	-1.7
4,036,220	+		BPHYT_RS17865	0.69	+0.8
4,036,221	-		BPHYT_RS17865	0.69	-1.5
4,036,223	+		BPHYT_RS17865	0.70	+0.3
4,036,224	-		BPHYT_RS17865	0.70	+0.4
4,036,229	+		BPHYT_RS17865	0.71	-0.3
4,036,230	-		BPHYT_RS17865	0.71	-0.6
4,036,266	+		BPHYT_RS17865	0.76	+1.2
4,036,267	-		BPHYT_RS17865	0.76	-0.5
4,036,267	-		BPHYT_RS17865	0.76	+0.0
4,036,297	+		BPHYT_RS17865	0.80	-0.8
4,036,308	+		BPHYT_RS17865	0.81	+1.4
4,036,416	+				+0.6
4,036,471	+		BPHYT_RS17870	0.12	+0.4
4,036,471	+		BPHYT_RS17870	0.12	+0.8
4,036,471	+		BPHYT_RS17870	0.12	+0.0
4,036,471	+		BPHYT_RS17870	0.12	+0.1
4,036,472	-		BPHYT_RS17870	0.12	-1.5
4,036,472	-		BPHYT_RS17870	0.12	-1.3
4,036,477	-		BPHYT_RS17870	0.14	-0.2