Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17395

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,940,995	-		BPHYT_RS17390	0.34	-0.9
3,941,033	+		BPHYT_RS17390	0.37	-5.0
3,941,034	-		BPHYT_RS17390	0.37	-2.0
3,941,154	-		BPHYT_RS17390	0.45	-2.3
3,941,154	-		BPHYT_RS17390	0.45	+0.1
3,941,183	+		BPHYT_RS17390	0.47	-4.7
3,941,183	+		BPHYT_RS17390	0.47	-4.0
3,941,183	+		BPHYT_RS17390	0.47	-2.2
3,941,183	+		BPHYT_RS17390	0.47	-4.8
3,941,297	+		BPHYT_RS17390	0.54	-3.9
3,941,297	+		BPHYT_RS17390	0.54	-3.5
3,941,298	-		BPHYT_RS17390	0.54	-4.8
3,941,299	+		BPHYT_RS17390	0.55	-4.5
3,941,300	-		BPHYT_RS17390	0.55	-0.4
3,941,300	-		BPHYT_RS17390	0.55	-2.4
3,941,300	-		BPHYT_RS17390	0.55	-0.6
3,941,303	+		BPHYT_RS17390	0.55	-2.1
3,941,303	+		BPHYT_RS17390	0.55	-6.3
3,941,303	+		BPHYT_RS17390	0.55	-2.8
3,941,303	+		BPHYT_RS17390	0.55	-2.8
3,941,303	+		BPHYT_RS17390	0.55	-2.3
3,941,304	-		BPHYT_RS17390	0.55	-1.9
3,941,304	-		BPHYT_RS17390	0.55	-3.0
3,941,304	-		BPHYT_RS17390	0.55	-3.5
3,941,304	-		BPHYT_RS17390	0.55	-6.1
3,941,304	-		BPHYT_RS17390	0.55	-3.8
3,941,306	+		BPHYT_RS17390	0.55	-3.9
3,941,306	+		BPHYT_RS17390	0.55	-5.5
3,941,310	-		BPHYT_RS17390	0.55	-3.2
3,941,432	-		BPHYT_RS17390	0.63	-1.1
3,941,846	+				-2.2
3,941,847	-				-3.2
3,941,847	-				-5.0
3,942,013	-				-3.0
3,942,027	+				-4.0
3,942,027	+				-3.3
3,942,027	+				-4.1
3,942,028	-				-3.8
3,942,043	-				-4.8
3,942,075	+		BPHYT_RS17395	0.14	-4.5
3,942,619	+				-4.3
3,943,269	+		BPHYT_RS17400	0.64	-2.3
3,943,277	+		BPHYT_RS17400	0.65	-3.4
3,943,277	+		BPHYT_RS17400	0.65	-2.0
3,943,277	+		BPHYT_RS17400	0.65	-5.0
3,943,278	-		BPHYT_RS17400	0.65	-3.0
3,943,278	-		BPHYT_RS17400	0.65	-5.1
3,943,358	+		BPHYT_RS17400	0.72	-1.2
3,943,359	-		BPHYT_RS17400	0.72	-5.2
3,943,517	+		BPHYT_RS17400	0.88	-4.7
3,943,518	-		BPHYT_RS17400	0.88	-3.5
3,943,518	-		BPHYT_RS17400	0.88	-5.5